Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq24 102 3e-16 >seq24 Length=2960390 Score = 102 bits (112), Expect = 3e-16 Identities = 131/178 (74%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040 || ||| | || |||||||||||| ||| |||||||| || || || ||||| || ||| Sbjct 299454 CCGATGCTGCGCGTGTTCAACAACACGGCCCGCTACGTGGACCAGGGCGGCGGTAAGCGC 299513 Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACGGTTTTTACTG 255100 || || ||| |||||||||| |||||||||||||||||||| | || | ||| Sbjct 299514 AAGGGCGCCTTCGCCATCTACCTTGAGCCGTGGCACGCCGACATCTTTGGCTTCCTGCTG 299573 Query 255101 CTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTAC-AC-CGCTGT 255156 ||| ||| ||||||| || || | | ||||||||| ||| | || |||||| Sbjct 299574 CTGAAGCGCAACACCGGCAAGGATGACCAGCGTGCCCGCGACCTCTTCTACGCGCTGT 299631 Score = 89.7 bits (98), Expect = 2e-12 Identities = 205/306 (67%), Gaps = 2/306 (1%) Strand=Plus/Plus Query 256143 TGCGCAACTCGCAACGATTGGCGCCCATGCCAACCGCCAGCACCGCTCAAATCCTGGGTA 256202 |||||||||| | | ||||||| |||||||||||| || | || |||||||| | Sbjct 300421 TGCGCAACTCCCTGCTGCTGGCGCCGATGCCAACCGCCTCGACGTCGCAGATCCTGGGCA 300480 Query 256203 ACGTGGAAAGCATCGAACCCCTGACTACCAACTTCTTCTCGCGCCGCGTTCGCTCCGGCG 256262 || || || |||| ||| | || ||||| ||| | || || || | ||||| Sbjct 300481 ACAACGAGTGCTTCGAGCCCTTCACCTCCAACATCTACGTCCGTCGTGTCCTGAGCGGCG 300540 Query 256263 AGTTCGCCGTGGTGAACCAGTACTTGGTGGACGACTTGGTACGACTCGGTCTGTGGAACG 256322 ||||| | ||||||||| ||||| | ||| ||| | | | ||| |||||||||| Sbjct 300541 AGTTCCCTGTGGTGAACAAGTACCTCGTGATGGACCTCATCAAGCGCGGACTGTGGAACG 300600 Query 256323 AGAAGATGCAACAACG-CATAATTCGGGCCCGTGGGTCGGTGCAGAACATTGAGCGCTTG 256381 ||| ||||| ||||| || || | ||||| || | | ||| || || | Sbjct 300601 AGACGATGC-GCAACGAGATCATCTCCTACAACGGGTCCGTTCTGTCCATCGACAGCATC 300659 Query 256382 CCGTTCCGCTTGCGCGAGGTATACCGCACGGTATGGGAGATGCCGCAACGATTGTTGGTC 256441 || | || ||| |||||||||| || |||||||| ||||| || | || || Sbjct 300660 CCTGATGACCTGAAGGAGCTATACCGCACCGTGTGGGAGATCCCGCAGCGCAAGCTGATC 300719 Query 256442 GACTTG 256447 ||| || Sbjct 300720 GACATG 300725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588326679445810