Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq7 93.3 5e-14 seq24 91.5 2e-13 seq92 82.4 1e-10 seq21 82.4 1e-10 seq18 82.4 1e-10 seq17 82.4 1e-10 seq14 82.4 1e-10 seq4 82.4 1e-10 >seq7 Length=814463 Score = 93.3 bits (102), Expect = 5e-14 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||||||| ||||||||||||||||||||| ||||| ||||| |||| Sbjct 236254 GCTCCTATAGTGTAGTGGTTATCACTTTGGACTTTGAATCCGGAAACCCAGGTTCGAATC 236195 Query 145342 CAGGTAGGAGC 145352 | ||||||||| Sbjct 236194 CTGGTAGGAGC 236184 >seq24 Length=2960390 Score = 91.5 bits (100), Expect = 2e-13 Identities = 535/842 (64%), Gaps = 17/842 (2%) Strand=Plus/Minus Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295 ||||| || || | ||||| || |||||||| ||| ||| |||| | || || Sbjct 299983 GCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTCCGGCGACGTGAACTCGACGATCTCG 299924 Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355 || || | ||| || | ||| || || || | ||||| ||||| ||| |||||||| Sbjct 299923 GTGCACAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCTGTTGCAC 299864 Query 111356 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTC 111415 || ||||||||||| ||| ||||| || ||||| |||| || | ||| || || | Sbjct 299863 GCGTCCTTGTAGAGGATGAAGGGCACGCCTGTCTCGATCTGCGACTCGAGGATGGCGAAC 299804 Query 111416 CAAACAT-CGGCGGCTGGTACAATGGC-GTTGGCC-CGTCCCTCCGCCTCGTACTTTGTG 111472 || || | | ||| |||| | | | | ||| || ||||| |||||||| | Sbjct 299803 CACACCTCCTGCGCCTGG---AGGGTCTGCACGCCGCGGCCCTCGGCCTCGTAGCGCTCG 299747 Query 111473 TAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTG-TCTGGACA 111531 |||||| || ||||| || || |||| ||| || || || || || | Sbjct 299746 TAGAGGCGCTCGAACTCTTCGCCGTAGCAGTCGCTGAGCCCCGGGCAGGTGCTCGGGTC- 299688 Query 111532 GAAAAGAGACCA-TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACA 111590 | || | ||| || || | || || || ||||||||||| ||||| || | ||||| Sbjct 299687 CATCAGCGTCCACTTCCCCTCGCTCTTC-ACACGCTTCATGAAGAGGTCCGGGACCCACA 299629 Query 111591 GGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAA 111650 | | | ||||| || | || || || | || |||| | | | | Sbjct 299628 GCGCGTAGAAGAGGTCGCGGGCACGCTGGTCATCCTTGCCGGTGTTGCGCTTCAGCAGCA 299569 Query 111651 GGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG-- 111708 |||| | | ||| || |||||||| |||||||| |||| |||| | ||||| || Sbjct 299568 GGAAGCCAAAGATGTCGGCGTGCCACGGCTCAAGGTAGATGGCGAAGGCGCCCTTGCGCT 299509 Query 111709 -ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAA 111767 || || | || | || ||||| || ||| ||| || ||||| ||||| || | | Sbjct 299508 TACCGCCGCCCTGGTCCACGTAGCGGGCCGTGTTGTTGAACACGCGCAGCATCGGCACCA 299449 Query 111768 TACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCATGG 111826 || | || || || || || || || | ||| | | | || Sbjct 299448 ACCCGTTCGACGTCCCGTTCGTGCCGGCGAT-GTAGCTGCCCGCGGCACGAATGTTGTGC 299390 Query 111827 ATGTGCATCCCAATACCCCCAGCCCACTTTG-AGATTTGCGCACACTCCGTAAGAGTTCC 111885 | ||||| || || || |||| | ||||| ||| || |||||| | || || | Sbjct 299389 ACGTGCAGGCCGATGCCACCAG-CTGCTTTGCTGATCACGGCGCACTCCTTCAGCGTGTC 299331 Query 111886 ATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG 111945 ||||| |||| ||| ||||||||| || | |||||||| | ||||||||| Sbjct 299330 GTAGATGCCGTCGATGCTGTCCTCCTTCGACGCCACGAGGAAGCACGAGCTCATCTGCGG 299271 Query 111946 TCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACAT 112005 | || || || || |||||||| || || || ||||| |||| | || | ||||| Sbjct 299270 CTTCGGCGTGCCGGCGTTGAAGAGCGTCGGCGTGGCGTGGGTGAAGAAGCCCTTCGACAT 299211 Query 112006 CTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCG 112065 || ||| ||||| ||| | | ||| | |||||||||||| || || || Sbjct 299210 GAGGTTGTACGTCTCGCGGACGTTCTTCAGGTCGCCGACGTGGATGCCGAGAGCAACACG 299151 Query 112066 CA 112067 || Sbjct 299150 CA 299149 >seq92 Length=13896 Score = 82.4 bits (90), Expect = 1e-10 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 || || ||| ||| || ||||| || || || || || || || |||| || || Sbjct 3170 GCGAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAAGGTCAGCCCC 3229 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| || || |||||||||| ||| | | |||||||| ||||||||||||||||| Sbjct 3230 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAAGGACCCGGAGAAGAAGATG 3289 Query 122779 CCCTCCAC 122786 ||||| || Sbjct 3290 CCCTCGAC 3297 >seq21 Length=2191012 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 1188715 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 1188656 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 1188655 CAGGTAGGAG 1188646 >seq18 Length=1454827 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 1231721 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 1231780 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 1231781 CAGGTAGGAG 1231790 >seq17 Length=1449266 Score = 82.4 bits (90), Expect = 1e-10 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 || || ||| ||| || ||||| || || || || || || || |||| || || Sbjct 520374 GCGAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAAGGTCAGCCCC 520433 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| || || |||||||||| ||| | | |||||||| ||||||||||||||||| Sbjct 520434 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAAGGACCCGGAGAAGAAGATG 520493 Query 122779 CCCTCCAC 122786 ||||| || Sbjct 520494 CCCTCGAC 520501 >seq14 Length=1309914 Score = 82.4 bits (90), Expect = 1e-10 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 || || ||| ||| || ||||| || || || || || || || |||| || || Sbjct 798114 GCGAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAAGGTCAGCCCC 798055 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| || || |||||||||| ||| | | |||||||| ||||||||||||||||| Sbjct 798054 GGCATCAGCCCACGCTTCTTCAGCCAGAACAGCGCGCAGAAGGACCCGGAGAAGAAGATG 797995 Query 122779 CCCTCCAC 122786 ||||| || Sbjct 797994 CCCTCGAC 797987 >seq4 Length=741884 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 484814 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 484755 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 484754 CAGGTAGGAG 484745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628028404516800