Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq17 123 3e-23 seq92 120 4e-22 seq14 104 3e-17 >seq17 Length=1449266 Score = 123 bits (136), Expect = 3e-23 Identities = 350/532 (66%), Gaps = 22/532 (4%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || ||| ||||||||||||||||||||| || | || ||| ||||||| Sbjct 520083 TACTCGCCCACCTTCTTCTCGAAGAAGTTTGTCTTGCCCTGCAGCGAGATCATCTCCATG 520142 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGA-----GGA 129842 || || || || | | | ||| | || |||||| | | || | | Sbjct 520143 AAGTCGAAGGGCTGCGTCACGTTGTAG-----TGTTTCTCCAAACCGAGCGACACAAGCA 520197 Query 129843 GACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGT 129902 | || |||| ||| |||| ||||||| | |||| ||||| |||||| ||||| || Sbjct 520198 GGCGGTCCGCCACGAACTCGATGTACTGCGCCATCAGCTCGGCGTTCATGCCGATCAGCC 520257 Query 129903 TACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGG 129962 || | |||||| |||||||| | ||| |||| ||| || ||| | | ||| Sbjct 520258 GCACCGGCAACGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCCAGAATGATCT 520317 Query 129963 CGTGAATGGTCTC-CGTGCCAGGTCTATTGCGCAAAGTC----TTGAAGAGTTC-CACGG 130016 | | | | ||| || | ||| || ||| | || ||| | || |||| Sbjct 520318 CCAGCACGCGCTCGCGCGACAG--CTTGTGCTTGATGTGCGAGTTGTACAGCAGGCACG- 520374 Query 130017 CAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTG 130076 | || ||| ||| || |||||||| || ||||| || || || |||| ||| || | Sbjct 520375 CGAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAAGGTCAGCCCCG 520434 Query 130077 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCC 130136 |||| || || |||||||||| |||||| | ||| || || || || ||||||||||| | Sbjct 520435 GCATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAAGGACCCGGAGAAGAAGATGC 520494 Query 130137 CCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACC 130196 |||| || |||||| | | || |||| | | ||| | || | | | || Sbjct 520495 CCTCGACGGCAGCGAACCCGATCAGGCGCT---CCTGGAAGCTCGCCTCGCTGCCGATCC 520551 Query 130197 ACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 | || |||||||| ||||| |||| || ||||||| ||||||||||| Sbjct 520552 AACGCACCGCCCACTCTGCCTTCTTCTGAATGCACGGGATTGTCTGGATCGC 520603 >seq92 Length=13896 Score = 120 bits (132), Expect = 4e-22 Identities = 351/533 (66%), Gaps = 22/533 (4%) Strand=Plus/Plus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| || || ||| ||||||||||||||| ||||| || | | ||| ||||||| Sbjct 2878 ATACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGGAGCGAGATCATCTCCAT 2937 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGA-----GG 129841 || || || || | | | ||| | |||| |||||| | | || | Sbjct 2938 GAAGTCGAAGGGCTGCGTCACGTTGTAG--TGCTT---CTCCAAACCGAGCGACACAAGC 2992 Query 129842 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGG 129901 || || |||| ||| |||||||||||| | |||| ||||| |||||| ||||| || Sbjct 2993 AGGCGGTCCGCCACGAACTCAATGTACTGCGCCATCAGCTCGGCGTTCATGCCGATCAGC 3052 Query 129902 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATG 129961 || | |||||| |||||||| | ||| |||| ||| || ||| | | ||| Sbjct 3053 CGCACCGGCAACGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCCAGAATGATC 3112 Query 129962 GCGTGAATGGTCTC-CGTGCCAGGTCTATTGCGCAAAGTC----TTGAAGAGTTC-CACG 130015 | | | | ||| || | ||| || ||| | || ||| | || |||| Sbjct 3113 TCCAGCACGCGCTCGCGCGACAG--CTTGTGCTTGATGTGCGAGTTGTACAGCAGGCACG 3170 Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 | || ||| ||| || |||||||| || ||||| || || || |||| ||| || Sbjct 3171 -CGAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAAGGTCAGCCCC 3229 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| || || |||||||||| |||||| | ||| || || || || ||||||||||| Sbjct 3230 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAAGGACCCGGAGAAGAAGATG 3289 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAAC 130195 ||||| || || ||| | | || |||| | | ||| | || | | | | Sbjct 3290 CCCTCGACGGCAGCAAACCCGATCAGCCGCT---CCTGGAAGCTCGCCTCGCTGCCGATC 3346 Query 130196 CACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 || || |||||||| ||||| |||| || ||||||| ||||||||||| Sbjct 3347 CAACGCACCGCCCACTCTGCCTTCTTCTGAATGCACGGGATCGTCTGGATCGC 3399 >seq14 Length=1309914 Score = 104 bits (114), Expect = 3e-17 Identities = 276/416 (66%), Gaps = 12/416 (3%) Strand=Plus/Minus Query 129839 AGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATG 129898 || || || |||| ||| |||| ||||||| | |||| |||||||||||| || || Sbjct 798294 AGCAGGCGGTCCGCCACGAACTCGATGTACTGCGCCATCAGCTCGGAGTTCATGCCAATC 798235 Query 129899 AGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACG 129958 || || |||||||| |||| ||| | ||| |||| ||| || ||| | | Sbjct 798234 AGCCGCACCGGCAGCGCGTCGCAGATAAACTCGCGCTCGATGTTCACCGCGTCCACGATG 798175 Query 129959 ATGGCGTGAATGGTCTC-CGTGCCAGGTCTATTGCGCAAAGTC----TTGAAGAGTTC-C 130012 || | | | | ||| || | ||| || ||| | || ||| | || | Sbjct 798174 ATCTCCAGCACGCGCTCGCGCGACAG--CTTGTGCTTGATGTGCGAGTTGTACAGCAGGC 798117 Query 130013 ACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGA 130072 ||| | || ||| ||| || |||||||| || ||||| || || || |||| ||| Sbjct 798116 ACG-CGAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAAGGTCAGC 798058 Query 130073 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAG 130132 || ||||| || || |||||||||| |||||| | ||| || || || || ||||||||| Sbjct 798057 CCCGGCATCAGCCCACGCTTCTTCAGCCAGAACAGCGCGCAGAAGGACCCGGAGAAGAAG 797998 Query 130133 ATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCA 130192 || ||||| || || ||| | | || |||| | | ||| | || | | Sbjct 797997 ATGCCCTCGACGGCAGCAAACCCGATCAGCCGCT---CCTGGAAGCTCGCCTCGCTGCCG 797941 Query 130193 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 | ||| || |||||||| ||||| |||| || ||||||| ||||| ||||| Sbjct 797940 ATCCATCGCACCGCCCACTCTGCCTTCTTCTGAATGCACGGGATCGTCTGAATCGC 797885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618431659458480