Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq92 111 2e-19 seq17 111 2e-19 seq14 102 1e-16 >seq92 Length=13896 Score = 111 bits (122), Expect = 2e-19 Identities = 185/267 (69%), Gaps = 3/267 (1%) Strand=Plus/Minus Query 94678 GACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTT 94737 |||| ||| || | ||| | | ||||||| || || | | || ||||| || | Sbjct 3444 GACACGTACATCACGGACAGCGAGGAGAAGATGCGTCTGCTGCACGCGATCCAGACGATC 3385 Query 94738 CCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCC 94797 ||||| ||||| ||||| || || ||||| || ||| | | | || || | | Sbjct 3384 CCGTGCATTCAGAAGAAGGCAGAGTGGGCGGTGCGTTGGATCGGCAGCGAGGCGAG---C 3328 Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 || ||||| || ||| ||||| || ||||| ||||||||||| || |||||| Sbjct 3327 TTCCAGGAGCGGCTGATCGGGTTTGCTGCCGTCGAGGGCATCTTCTTCTCCGGGTCCTTC 3268 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 ||||| | | ||||| |||||||| || || ||||| || || |||| ||||||| Sbjct 3267 TGCGCGCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCGGGGCTGACCTTCAGCAACGAG 3208 Query 94918 CTTATCTCTCGTGACGAGGGACTCCAC 94944 || ||||| || |||||||| || ||| Sbjct 3207 CTGATCTCGCGCGACGAGGGCCTGCAC 3181 >seq17 Length=1449266 Score = 111 bits (122), Expect = 2e-19 Identities = 185/267 (69%), Gaps = 3/267 (1%) Strand=Plus/Minus Query 94678 GACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTT 94737 |||| ||| || | ||| | | ||||||| || | | | | || ||||| ||| | Sbjct 520648 GACACGTACATCACGGACAGCGAGGAGAAGATGCGGTTGCTGCACGCGATCCAGACAATC 520589 Query 94738 CCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCC 94797 ||||| ||||| ||||| || || ||||| || ||| | | | || || | | Sbjct 520588 CCGTGCATTCAGAAGAAGGCAGAGTGGGCGGTGCGTTGGATCGGCAGCGAGGCGAG---C 520532 Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 || ||||| || ||| || || || ||||| ||||||||||| || |||||| Sbjct 520531 TTCCAGGAGCGCCTGATCGGGTTCGCTGCCGTCGAGGGCATCTTCTTCTCCGGGTCCTTC 520472 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 ||||| | | ||||| |||||||| || || ||||| || || |||| ||||||| Sbjct 520471 TGCGCGCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCGGGGCTGACCTTCAGCAACGAG 520412 Query 94918 CTTATCTCTCGTGACGAGGGACTCCAC 94944 || ||||| || |||||||| || ||| Sbjct 520411 CTGATCTCGCGCGACGAGGGCCTGCAC 520385 >seq14 Length=1309914 Score = 102 bits (112), Expect = 1e-16 Identities = 173/246 (70%), Gaps = 6/246 (2%) Strand=Plus/Plus Query 94702 GAGAAGAAGCAGC-TCTT-TGAA-GCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCG 94758 ||| |||||| || ||| || | || || || || | ||||| ||||| ||||| || Sbjct 797861 GAGGAGAAGCTGCGTCTGCTGCACGCGATTCAGACGATCCCGTGCATTCAGAAGAAGGCA 797920 Query 94759 GATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCA 94818 || ||||| || ||| | | | || || | ||| ||||| || ||| Sbjct 797921 GAGTGGGCGGTGCGATGGATCGGCAGCGAGGCGAG---CTTCCAGGAGCGGCTGATCGGG 797977 Query 94819 TTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAG 94878 ||||| || ||||| ||||||||||| || ||||||||||| | | ||||| ||| Sbjct 797978 TTTGCTGCCGTCGAGGGCATCTTCTTCTCCGGGTCCTTCTGCGCGCTGTTCTGGCTGAAG 798037 Query 94879 AAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGA 94938 ||||| || || ||||| || || |||| ||||||||| ||||| || |||||||| Sbjct 798038 AAGCGTGGGCTGATGCCGGGGCTGACCTTCAGCAACGAGCTGATCTCGCGCGACGAGGGC 798097 Query 94939 CTCCAC 94944 || ||| Sbjct 798098 CTGCAC 798103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583257460831920