Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq21 91.5 4e-13 >seq21 Length=2191012 Score = 91.5 bits (100), Expect = 4e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| || || | | || || || || || || ||||| || || || || || || Sbjct 978567 CATACCGCCGCGCAGGCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTC 978626 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || || || || || ||||||||||| || || ||||| || || Sbjct 978627 CGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGG 978686 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TT 140685 ||||| || || || ||||| || || || || || || || |||| || | ||| | Sbjct 978687 GGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTC-GCTGGCCT 978745 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || | | ||||| ||||| || || || || || |||||||| Sbjct 978746 CCACCTCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 978797 Score = 91.5 bits (100), Expect = 4e-13 Identities = 163/234 (70%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| || || | | || || || || || || ||||| || || || || || || Sbjct 978795 CATACCGCCGCGCAGGCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTC 978854 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || || || || || ||||||||||| || || ||||| || || Sbjct 978855 CGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGG 978914 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TT 140685 ||||| || || || ||||| || || || || || || || |||| || | ||| | Sbjct 978915 GGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTC-GCTGGCCT 978973 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC-AAAAATCTGCATT 140738 | || || || | | ||||| ||||| || || || || ||| ||||||||| Sbjct 978974 CCACCTCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACGAAAGATCTGCATT 979027 Score = 89.7 bits (98), Expect = 2e-12 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || || || ||||| || || || || || || | | || || || || Sbjct 976990 AGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCC 977049 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || || ||||| || || ||||| || || || ||| Sbjct 977050 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 977109 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGT 140704 || || || || || || || || |||| || | ||| || || || || | | || Sbjct 977110 TGGATCTTCGCCTTCACGTTCTCGATCGTGTC-GCTGGCCTCCACCTCCAGCGCGATGGT 977168 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| ||||| || || || || || |||||||| Sbjct 977169 CTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 977201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515245508297774