Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq24 279 6e-70 seq17 105 7e-18 >seq24 Length=2960390 Score = 279 bits (308), Expect = 6e-70 Identities = 544/785 (69%), Gaps = 24/785 (3%) Strand=Plus/Plus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 || ||| | || || |||| || || | || ||||||| | |||| | | ||| Sbjct 299133 CCGCAGCAGCTCTTTCTGCGTGTTGCTCTCGGCATCCACGTCGGCGACCTGAAGAACGTC 299192 Query 53240 CGTGAGACGTACGACTTAATGAGCCAAAAG-TACTTTACGCACGCCACGCCAACCCTGTT 53298 || ||||||||| || | ||| | || | | ||| || ||||||||||| || || || Sbjct 299193 CGCGAGACGTACAACCTCATGT-CGAAGGGCTTCTTCACCCACGCCACGCCGACGCTCTT 299251 Query 53299 CAACGCTGGTACGAATCACCCTCAGATGTCGAGCT---GCTTCCTGGTGGCGATGAAGGA 53355 |||||| || ||| | || |||||| |||| ||||||| |||||| |||||| Sbjct 299252 CAACGCCGGCACGCCGAAGCCGCAGATG---AGCTCGTGCTTCCTCGTGGCGTCGAAGGA 299308 Query 53356 TGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTC 53415 ||| ||||||||||||||||| ||||| |||||||| ||| ||| ||| | Sbjct 299309 GGACAGCATCGACGGCATCTACGACACGCTGAAGGAGTGCGCCGTGATCAGCAAAGCAGC 299368 Query 53416 GGGTGGTATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGA 53474 ||||| ||||| | ||| ||| | ||| | ||||| |||| ||| || | Sbjct 299369 TGGTGGCATCGGCCTGCACGTGCAC-AACATTCGTGCCGCGGGCAGCTACATCGCCGGCA 299427 Query 53475 CGAACGGCGTCGCCGAT-GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGG 53533 ||||||| | || ||| || | ||||| ||||| ||||| ||||||||||||||||| Sbjct 299428 CGAACGG-GACGTCGAACGGGTTGGTGCCGATGCTGCGCGTGTTCAACAACACGGCCCGC 299486 Query 53534 TACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGG 53593 ||||| ||||||| || || ||||||||||| | |||||||||||||| ||||||||| Sbjct 299487 TACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCATCTACCTTGAGCCGTGG 299546 Query 53594 CACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGC 53653 ||||||||||| | | || || |||| | || || | || || ||| Sbjct 299547 CACGCCGACATCTTTGGCTTCCTGCTGCTGAAGCGCAACACCGGCAAGGATGACCAGCGT 299606 Query 53654 TGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAA 53712 ||| ||||| || ||| || |||||| | ||||||||||||||| | ||| ||| Sbjct 299607 GCCCGCGACCTCTTCTAC-GCGCTGTGGGTCCCGGACCTCTTCATGAAGCGTGTGAAGAG 299665 Query 53713 GGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGT-CTACG 53771 || | | ||||| |||||| ||||| | ||||| || || ||| | | ||||| Sbjct 299666 CGAGGGGAAGTGGACGCTGATGGACCCGAGCACCTGCCCGGGGCT-CAGCGACTGCTACG 299724 Query 53772 GTGAGGAGTTTAACGAG---ATGTATCGGACG-TACGCAGTTCAGGGCCGCTACAAGAAG 53827 | || ||||| |||| | || || || |||| | |||||||| | | || Sbjct 299725 GCGAAGAGTT---CGAGCGCCTCTA-CGAGCGCTACGAGGCCGAGGGCCGCGGCGTGCAG 299780 Query 53828 AAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACG 53887 | || |||||| ||||| ||| || |||||| || ||| | ||||| || | Sbjct 299781 ACCCTCCAGGCGCAGGAGGTGTGGTTCGCCATCCTCGAGTCGCAGATCGAGACAGGCGTG 299840 Query 53888 CCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTC 53947 || | ||| ||||||||| || |||| ||| |||||||||||| ||||| | Sbjct 299841 CCCTTCATCCTCTACAAGGACGCGTGCAACAGCAAGTCGAACCAGAAGAACCTCGGCACC 299900 Query 53948 ATCAA 53952 ||||| Sbjct 299901 ATCAA 299905 Score = 181 bits (200), Expect = 1e-40 Identities = 542/818 (66%), Gaps = 34/818 (4%) Strand=Plus/Plus Query 55133 ACTCGGAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAG 55192 || || ||||| ||||| ||||| || || ||||||||| || ||||||| Sbjct 300057 ACCCGCAACCTCAACCGTGTCATTGATCGCAACTACTACCCGGTCGAGACGGCGCGGCGC 300116 Query 55193 TCCAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATG 55252 |||| | || |||| || ||| | |||| || ||||| ||||||||| |||||| Sbjct 300117 AGCAACATGCGCAACCGCCCGGTCGGCCTCGGCGTGCAGGGTTTGGCCGACGCCTTCATT 300176 Query 55253 ATGCTCGGATTGCCCTTCGACTCGGAACCTGCTCG-AGAAATT-AACCAGGACATCTTC- 55309 ||||| | ||||||||| || | || || |||| | ||| ||| || ||| Sbjct 300177 CTGCTCCGCCTGCCCTTCG--TCAGTGCCGAGGCGCAGAAGGTGAACTCGGAGATTTTCG 300234 Query 55310 AGTCGCATCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGACC 55369 || || |||||||| || ||| |||||| |||| | | || | | || || || Sbjct 300235 AGACG-ATCTACTTCGCGGCGGTCGAGGCGTCGATGGAGATAGCGAAGGAGGAAGGCCCC 300293 Query 55370 TACGAGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGGGC 55429 |||||||| ||| | || || | |||| ||||||||||||| | ||| Sbjct 300294 TACGAGACCTTCAAGGGCAGCCCGGCGAGCGAGGGCATTCTCCAGTTCGACATGTGGAAG 300353 Query 55430 AA-----GTCTGACC------CCATG----TTTGACAAGTTGAAGCATGACATTCACTTG 55474 || | | || | | || | |||| ||||| | || | | | Sbjct 300354 AACGCGCGGCCGAACAGCGGGCGGTGGGACTGGGACAGCCTGAAGGA-GAAGGTGA-TGC 300411 Query 55475 TGG--GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGA 55532 || ||| | |||||||||||||| ||||||| ||||||||||| |||||| | |||| Sbjct 300412 AGGTCGGCATGCGCAACTCCCTGCTGCTGGCGCCGATGCCAACCGCCTCGACGTCGCAGA 300471 Query 55533 TCATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCG-GACC 55591 || |||||||||||||| |||||||| | ||| ||||||||||| | || || | || Sbjct 300472 TCCTGGGCAACAACGAGTGCTTCGAGCCCTTCACCTCCAACATCTACGTCCGTCGTGTCC 300531 Query 55592 CTAGCAGGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAAC 55651 ||| || ||||| || | |||||| ||||||| | |||||| ||| | Sbjct 300532 TGAGC-GGCGAGTTCCCTGTGGTGAACAAGTACCTCGTGATGGACCTCATCAAGCGCGGA 300590 Query 55652 AAGTGGAACCCGCAGAT-CAAGACG-GATATTGTGCGGAACGGGGGGTCCGTCCAG--AA 55707 ||||||| | ||| | ||| ||| | | | || |||||||| | | | Sbjct 300591 CTGTGGAACGAGACGATGCGCAACGAGATCATCTCC--TACAACGGGTCCGTTCTGTCCA 300648 Query 55708 TCTGGAG-ATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGA 55766 || || || ||| || |||||| | ||||| || ||||||||||| || ||| Sbjct 300649 TCGACAGCATCCCTGATGACCTGAAGGAGCTATACCGCACCGTGTGGGAGATCCCGCAGC 300708 Query 55767 AGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGA 55826 | ||||| |||||| |||||| || |||||| |||||||| ||||| || | Sbjct 300709 GCAAGCTGATCGACATGGCACGTGATCGCGGCCAGTACATTGACCAGTCGCAGTCGCTAA 300768 Query 55827 ACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGA 55886 || |||| || ||| || || || || | | ||||||| ||| ||| ||| Sbjct 300769 ACCTCTTTTTGCAGAGCCCCTCGTCGGGGCAGATCACGTCGATGCTCTTCTACACCTGGG 300828 Query 55887 AGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACC 55924 || || |||||||| ||| ||||||| ||||| ||| Sbjct 300829 AGTGCGGGCTCAAGACTGGTGTGTACTACCTGCGCACC 300866 Score = 114 bits (126), Expect = 1e-20 Identities = 276/399 (69%), Gaps = 23/399 (6%) Strand=Plus/Minus Query 152742 CAGCTTCGGCCAGTACACGTGGAACATGTTGAGGACCAAGCCCTT-GATGTGCGATCCGT 152800 ||| ||||||||| | ||||| | ||||| || |||||||| ||||||||| |||| Sbjct 908070 CAGGTTCGGCCAGAAGCAGTGGATGAAGTTGATGAG-AAGCCCTTTGATGTGCGACCCGT 908012 Query 152801 CAAGATCCGCGTCGGTCATGATCATCAGACGACCGTAGCGCAGGTCACGT-AGTG-ACCC 152858 | ||||| ||||| ||||| ||||||| | ||||||||||| | ||| ||| | | Sbjct 908011 CGTGATCCTGGTCGGACATGAGCATCAGATGGCCGTAGCGCAG--CCCGTCCGTGTTCTC 907954 Query 152859 GTAGACCTTTC----CATGTTGAAGCCCGAGGATCTTTTTGAGGTTGGAAAATTCCTCAT 152914 ||| ||| | |||| | ||||| | |||||| | | | | | ||||| Sbjct 907953 GTA---CTTGCGGCTGATGTCG-AGCCCCATGATCTTCATCACGCTCTGGATCTCCTCGC 907898 Query 152915 TATCGGTCACCTGTTTCACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGGAA 152974 | | || || || | || | | || || || ||| ||||||| || || || |||| Sbjct 907897 ATTGAGCCAGCTTCTTGAGCGAGACGTCGCGGACGTTGAGCGGCTTGCCGCGCAGCGGAA 907838 Query 152975 ACACGCCGAACGCGTTGCGG-CCTACAACGCTCAGACCGGCAATAGCA-AGGGCTTTCGC 153032 ||||||| || || |||| ||| | ||| || |||||| | ||| || | || || Sbjct 907837 ACACGCCAAAAAAGTCGCGGTCCTTC-ACGGCAAGTCCGGCAGT-GCAGAGCGTCTTGGC 907780 Query 153033 CGAGTCACCCTCGGTGATAATAAGCGTACAGTCGTGAGACCG--ATGAGTACCGGCCCAG 153090 |||||||||||||| | || || || ||| || | | ||| | ||||||| | Sbjct 907779 GGAGTCACCCTCGGTCAGGATGAGGGTGCAG-CG-GTGGCCGTTCTTGCCACCGGCCTCG 907722 Query 153091 TTGGCGTCGTCAAGCTTGGGGATTCCCGTGATCCTGCTT 153129 || |||||||| ||||| || || ||| ||| |||||| Sbjct 907721 TTCGCGTCGTCCAGCTTCGGAATGCCCAGGAT-CTGCTT 907684 Score = 96.9 bits (106), Expect = 4e-15 Identities = 253/375 (67%), Gaps = 12/375 (3%) Strand=Plus/Minus Query 117983 GGCCAGTACACGTGGATCATGTTCAGCACGAGCCCCTTGATATGGGAACCGTCCAGATCC 118042 |||||| | |||||| | ||| | | ||||| ||||| || || ||||| ||||| Sbjct 908063 GGCCAGAAGCAGTGGATGAAGTTGATGAGAAGCCCTTTGATGTGCGACCCGTCGTGATCC 908004 Query 118043 GCATCGGTCATGATCATCAGGCGGCCGTACCGTAAATCTCTCAGGGAGTTATAAACCTTA 118102 |||| ||||| |||||| ||||||| || | | | | ||| | ||| Sbjct 908003 TGGTCGGACATGAGCATCAGATGGCCGTAGCGCAGCCCGTCC---GTGTTCTCGTACTTG 907947 Query 118103 CCA-TGTTG--GAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTCATTTTCCGTCACC 118159 | || || |||||| | |||||| | | | | | ||||| || | || | Sbjct 907946 CGGCTGATGTCGAGCCCCATGATCTTCATCACGCTCTGGATCTCCTCGCATTGAGCCAGC 907887 Query 118160 TGTTTTATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAAC 118219 | || | | | |||| || |||||| ||||||| || ||||| |||||||||||||| Sbjct 907886 TTCTTGAGCGAGACGTCGCGGACGTTGAGCGGCTTGCCGCGCAGCGGAAACACGCCAAAA 907827 Query 118220 TTGTCACGGCCCACAACGCTCAAG-CCGGCAATAGCA-AGGGCCTTCGCCGAGTCACCCT 118277 ||| ||| || ||| |||| |||||| | ||| || | ||| || |||||||||| Sbjct 907826 AAGTCGCGGTCCTTCACGG-CAAGTCCGGCAGT-GCAGAGCGTCTTGGCGGAGTCACCCT 907769 Query 118278 CGGTAATAATAAGAGTGCACTCGGT-GCTGCGATGAGTACCGGCCCAATTAGCATCATCC 118336 |||| | || || ||||| |||| || | | ||||||| || || || ||| Sbjct 907768 CGGTCAGGATGAGGGTGCA-GCGGTGGCCGTTCTTGCCACCGGCCTCGTTCGCGTCGTCC 907710 Query 118337 AGCTTCGGAACGCCC 118351 |||||||||| |||| Sbjct 907709 AGCTTCGGAATGCCC 907695 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/236 (70%), Gaps = 12/236 (5%) Strand=Plus/Minus Query 117332 TCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCA--CT--CGGCTCCAAGAGGTTCAG 117387 |||||||| || |||||||||||||| ||||| || ||| | |||| | Sbjct 908771 TCCTTGCCGCCCTGCAGACGCGTACCGAACTGTCCGTCCTTGCGG----AGGAGGGGGAC 908716 Query 117388 GTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTC 117447 ||||||| ||| || |||| || |||| | ||| ||||| |||| || ||| Sbjct 908715 GTTGTTGCTGCCTACGAAGTCCTGCGCCATGCCGACGATCGTCTGCACGAGGGACGGCTC 908656 Query 117448 ACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTC 117507 || ||||| || || | ||||| | |||||| ||||||||||| ||||||| ||| | Sbjct 908655 GCCGTGGTGGTAGGCGGAGTGCTCGGACACGTAACCCGCCAGCTGCACCACCTTGATGGC 908596 Query 117508 --TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTT 117561 ||||| ||||| ||||| |||||| | | | ||||||||| | ||||| Sbjct 908595 GTTGACG--AGGTTGCGCTTGAAGCAGGCGAAGAGGATCTTGCGCTGGCCAGGCTT 908542 Score = 91.5 bits (100), Expect = 2e-13 Identities = 191/277 (69%), Gaps = 16/277 (6%) Strand=Plus/Minus Query 152026 CGCGTGAAGATGTATCG-GGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAA 152084 |||||||||||||| || ||| ||| |||||||| || ||| ||||| || || Sbjct 908801 CGCGTGAAGATGTAACGCCCAGC-GGCGTGGTCCTTGCCGCCCTGCAGACGCGTACCGAA 908743 Query 152085 CTGTCCAGAGGGCT---CGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAA 152141 |||||| | || ||||||| || ||||||| ||| ||||| | ||| |||| Sbjct 908742 CTGTCC---GTCCTTGCGGAGGAGGGGGACGTTGTTGCTGCCTACGAAGTCCTGCGCCAT 908686 Query 152142 ATTCACAATCGTGCCCTGC---AGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGC 152198 || ||||| |||| || || || |||||||| || || | ||||| | Sbjct 908685 GCCGACGATCGT---CTGCACGAGGGACGGCTCGCCGTGGTGGTAGGCGGAGTGCTCGGA 908629 Query 152199 GATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTC-AGGTTCTTCTTGAGACAGG 152257 | ||| ||||||| |||| ||||||| ||| ||| | | ||||| ||||| |||| Sbjct 908628 CACGTAACCCGCCAGCTGCACCACCTTGATG-GCGTTGACGAGGTTGCGCTTGAAGCAGG 908570 Query 152258 CGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTC 152294 || | | | |||||||||| || || || ||||| Sbjct 908569 CGAAGAGGATCTTGCGCTGGCCAGGCTTGAAGCCGTC 908533 >seq17 Length=1449266 Score = 105 bits (116), Expect = 7e-18 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCG-GGAGCTGGCCGCATCCTTGCC-ACCTGCCAGCCGCGTTCCAAACT 152086 ||||||||||| || || || ||| ||| || || | |||| || ||| || |||| Sbjct 1338803 GTGAAGATGTAGCGCGGCGC-GGCGTGATCGTTACCCAGCTGCTGGC-GCGAACCGAACT 1338860 Query 152087 GTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCA 152146 | || ||| |||| ||||||| ||||||| | || ||||||||| |||| |||| Sbjct 1338861 GACCCTCCGGCACGAGCAGGTTGATGTTGTTGCCACCGGTGAAATTCTGCGCCATCTTCA 1338920 Query 152147 CAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATC 152206 ||||||| ||||||| ||| ||||| || || | | || | ||||| |||||| | Sbjct 1338921 CAATCGTCTCCTGCAGGGACGCCTCACCATGATGGAAGGACGACACCTCCGAGATGTAAC 1338980 Query 152207 CCGCCAACTGCGCCACCTT 152225 ||| | |||||||||||| Sbjct 1338981 CCGAGAGCTGCGCCACCTT 1338999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547212867188400