Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq331 89.7 3e-13 seq26 87.8 1e-12 seq21 84.2 1e-11 >seq331 Length=20977 Score = 89.7 bits (98), Expect = 3e-13 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| ||| | || || ||| |||||| || ||||| || || | || || || Sbjct 8080 AGGCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGG 8139 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || |||||||| || | ||||| |||||||| || | |||||| Sbjct 8140 CCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCC 8199 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | || ||||| | |||||| |||| | Sbjct 8200 TTGTCCTGGATC-TTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGC 8258 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || || || ||||| | ||| ||||| || ||||||||| || Sbjct 8259 GATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGGTG 8301 >seq26 Length=613868 Score = 87.8 bits (96), Expect = 1e-12 Identities = 157/224 (70%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| ||| | || || ||| |||||| || ||||| || || | || || || Sbjct 365967 AGGCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGG 366026 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || |||||||| || | ||||| |||||||| || | |||||| Sbjct 366027 CCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCC 366086 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 ||||| |||| || | || ||| | || ||||| |||| ||| || || | || Sbjct 366087 TTGTCCTGGATC-TTCGCCTTCACGTTCTCGATCGTGTCGCTCGC-CTCGACCTCGAGGG 366144 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 ||||| || || || | ||| ||||| || ||||||||| || Sbjct 366145 CGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATGGTG 366188 >seq21 Length=2191012 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || || | ||| | || || ||| |||||| || ||||| || || | Sbjct 977203 CCGCCGCGCAGGCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 977262 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || || |||||||| || | ||||| |||||||| || Sbjct 977263 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 977322 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || ||| | || ||||| | |||||| Sbjct 977323 ATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCAC 977381 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || || ||||| | ||| ||||| || |||||||| Sbjct 977382 CTCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 977429 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || || | ||| | || || ||| |||||| || ||||| || || | Sbjct 977431 CCGCCGCGCAGGCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 977490 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || || |||||||| || | ||||| |||||||| || Sbjct 977491 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 977550 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || ||| | || ||||| | |||||| Sbjct 977551 ATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCAC 977609 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || || ||||| | ||| ||||| || |||||||| Sbjct 977610 CTCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 977657 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || || | ||| | || || ||| |||||| || ||||| || || | Sbjct 977659 CCGCCGCGCAGGCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 977718 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || || |||||||| || | ||||| |||||||| || Sbjct 977719 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 977778 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || ||| | || ||||| | |||||| Sbjct 977779 ATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCAC 977837 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || || ||||| | ||| ||||| || |||||||| Sbjct 977838 CTCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 977885 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || || | ||| | || || ||| |||||| || ||||| || || | Sbjct 977887 CCGCCGCGCAGGCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 977946 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || || |||||||| || | ||||| |||||||| || Sbjct 977947 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 978006 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || ||| | || ||||| | |||||| Sbjct 978007 ATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCAC 978065 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || || ||||| | ||| ||||| || |||||||| Sbjct 978066 CTCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 978113 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || || | ||| | || || ||| |||||| || ||||| || || | Sbjct 978115 CCGCCGCGCAGGCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 978174 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || || |||||||| || | ||||| |||||||| || Sbjct 978175 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 978234 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || ||| | || ||||| | |||||| Sbjct 978235 ATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCAC 978293 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || || ||||| | ||| ||||| || |||||||| Sbjct 978294 CTCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 978341 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || || | ||| | || || ||| |||||| || ||||| || || | Sbjct 978343 CCGCCGCGCAGGCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 978402 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || || |||||||| || | ||||| |||||||| || Sbjct 978403 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 978462 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || ||| | || ||||| | |||||| Sbjct 978463 ATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCAC 978521 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || || ||||| | ||| ||||| || |||||||| Sbjct 978522 CTCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 978569 Score = 84.2 bits (92), Expect = 1e-11 Identities = 171/250 (68%), Gaps = 3/250 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || || | ||| | || || ||| |||||| || ||||| || || | Sbjct 978799 CCGCCGCGCAGGCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 978858 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || || || ||||| || | ||||| |||||||| || Sbjct 978859 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 978918 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || ||| | || ||||| | |||||| Sbjct 978919 ATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCAC 978977 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC-AAAAATCTGCATGTTGATTGTAT 34717 |||| | || || || ||||| | ||| ||||| ||| |||||||| ||| | || | Sbjct 978978 CTCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACGAAAGATCTGCATTTTGTTGGTTT 979037 Query 34718 GACGTTGAAA 34727 |||| ||| Sbjct 979038 CTCGTTTAAA 979047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314727843218714