Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq331 95.1 1e-14 seq20 95.1 1e-14 >seq331 Length=20977 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| || || || || |||||||||||| | || | || || ||||| | Sbjct 8299 CCATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCA 8240 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 |||| |||| |||| || || || || || ||||| || ||||| || || || | Sbjct 8239 GCGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACC 8180 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||||| | || | |||||||| || |||| || | || | | || |||| Sbjct 8179 AGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACA 8120 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || |||||||| || | || | || |||| |||| |||||||| Sbjct 8119 ACATCCAGAAGGAGTCCACGCTGCACCTCGTGCTGCGCCTGCGCGGTGGCAT 8068 >seq20 Length=1996037 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| ||||| || || |||||||||||| | || | || || || || || Sbjct 1271347 CCATGCAGATCTTTGTGAAGACGCTGACCGGCAAGACGATCGCCCTCGAGGTCGAGGCGA 1271288 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 |||| |||| |||| || || || || || || || || ||||| || || || | Sbjct 1271287 GCGACACGATCGAGAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATTCCCCCGGACC 1271228 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||||| | || | |||||||| || |||| || | || | | || |||| Sbjct 1271227 AGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACA 1271168 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || |||||||| || | || | || |||| |||| |||||||| Sbjct 1271167 ACATCCAGAAGGAGTCCACGCTGCACCTCGTGCTGCGCCTGCGCGGTGGCAT 1271116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434915910092160