Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq10 147 2e-30 >seq10 Length=920654 Score = 147 bits (162), Expect = 2e-30 Identities = 463/707 (65%), Gaps = 19/707 (3%) Strand=Plus/Plus Query 34147 GAAGGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAA 34206 ||||| |||||| ||||| || ||| || | | |||||| | ||| || | | Sbjct 781449 GAAGGAGGACCGCACCGGCGTCGGCACCATCAGCCTCTTCGGCGCGCAGATGCGCTTCTC 781508 Query 34207 CCTTCGGGGCGAAT---TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGT 34263 || |||| | | | ||||||||||||||||| || || | |||| ||||| Sbjct 781509 GCTGCGGGACAACCAGCTGCCGCTGCTGACGACGAAGCGCGTCTTCTGGCGTGGCGTCTG 781568 Query 34264 CGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGG 34323 ||| ||||| | |||||| | | || | || ||| | || ||| | | || Sbjct 781569 CGAAGAGCTCATCTGGTTCCTCCGTGGCGAGACAAACGCGCAGCTGCTGGCAGACAAGGA 781628 Query 34324 GGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATC 34383 | | |||||||||| |||| || || || || || |||| || ||| | | Sbjct 781629 CATTCACATCTGGGACGGCAACGGCTCCCGCGAGTTCCTCGACAGCCGTGGGCTGACGGA 781688 Query 34384 TCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGA 34443 ||||| ||| | || ||||| ||||| ||||||||| | ||||| ||||| || Sbjct 781689 GAATAAGGAGATGGACCTCGGGCCGGTGTACGGCTTCCAGTGGCGCCACTTCGGGGCCGA 781748 Query 34444 GTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACG-TGA 34502 ||| || ||| ||| | || || |||| | ||| ||| | || ||| | Sbjct 781749 GTACAAAGGCTTCGACGCGAATTACGACGGCGAGGGCGTGGATCAGATCAAG-ACGATCG 781807 Query 34503 TCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGC---GCGTGGAACC 34559 |||| ||| | ||| |||||| | ||| | | || || | | | |||||||||| Sbjct 781808 TCGAGACCCTCAAGACGAACCCCAACGACCGCCG--TC-TGCTCTTCACGGCGTGGAACC 781864 Query 34560 CGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGT-- 34617 || | || | ||||||||| || || |||||| |||| |||| |||||||| Sbjct 781865 CGTGCGCGCTGCACAAGATGGCGCTGCCGCCCTGCCACCTCCTCGGCCAGTTCTACGTGA 781924 Query 34618 ---CGCGAATGG-GGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAG 34673 ||| | | ||||||||||||| ||| || || || ||| | |||||||| | | Sbjct 781925 ACACGCAGACGAAGGAGCTGTCCTGCATGCTGTACCAGCGCTCGTGCGACATGGGTCTCG 781984 Query 34674 GGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCG-TG 34732 | ||||| |||||||| || ||||| |||| ||| |||| || || | || Sbjct 781985 GCGTGCCCTTCAACATCGCGTCGTACGCCTTGCTGACGATTCTGATTGC-CAAGGCGACC 782043 Query 34733 GGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCAC 34792 ||| || |||||| ||||| ||||| || | || || |||||| | ||| |||||| Sbjct 782044 GGGCTGCGTCCTGGCGAGCTCGTGCACACCCTCGGTGACGCGCATGTGTACAGCAACCAC 782103 Query 34793 ATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCC 34839 | ||| ||| | |||||||| || | ||| || | ||||| Sbjct 782104 GTGGAGGCGCTGAAGGAGCAGCTGCAGCGGGTGCCGCGTGCCTTCCC 782150 Score = 147 bits (162), Expect = 2e-30 Identities = 463/707 (65%), Gaps = 19/707 (3%) Strand=Plus/Minus Query 6506 GGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAG 6565 ||||| | || ||| | || |||||||| | ||| ||| | |||||| ||| Sbjct 782150 GGGAAGGCACGCGGCACCCGCTGCAGCTGCTCCTTCAGCGCCTCCACGTGGTTGCTGTAC 782091 Query 6566 ATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCA-CGACATGAGC 6624 | |||||| || || | || ||||| ||||| |||||| || ||| || | || || Sbjct 782090 ACATGCGCGTCACCGAGGGTGTGCACGAGCTCGCCAGGACGCAGCCCGGTCGCCTTG-GC 782032 Query 6625 GATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTC 6684 |||| ||| |||| ||||| || |||||||| ||||| || | |||||||| Sbjct 782031 AATCAGAATCGTCAGCAAGGCGTACGACGCGATGTTGAAGGGCACGCCGAGACCCATGTC 781972 Query 6685 TCCCGATCGTTGATAGAGCTGGCAGGACAGCTCC-CCATTCGCG-----ACGTAGAATTG 6738 | ||| || || || ||| ||||||||||||| | | ||| |||||||| || Sbjct 781971 GCACGAGCGCTGGTACAGCATGCAGGACAGCTCCTTCGTCTGCGTGTTCACGTAGAACTG 781912 Query 6739 GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGC--- 6795 || |||| |||||| || || ||||||||| | || | |||||||||||| Sbjct 781911 GCCGAGGAGGTGGCAGGGCGGCAGCGCCATCTTGTGCAGCGCGCACGGGTTCCACGCCGT 781852 Query 6796 GCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCA-CGTACTGCA 6854 | | | || || | | ||| | |||||| ||| | ||| |||| | ||| || | Sbjct 781851 GAAGAGCA-GA--CGGCGGTCGTTGGGGTTCGTCTTGAGGGTCTCGACGATCGT-CTTGA 781796 Query 6855 GCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGT 6914 ||| ||| | |||| || || | ||| ||| || ||||| ||||| |||| Sbjct 781795 TCTGATCCACGCCCTCGCCGTCGTAATTCGCGTCGAAGCCTTTGTACTCGGCCCCGAAGT 781736 Query 6915 GTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCC 6974 | | ||||||||| ||||| ||||| || | ||| ||||| | | ||| | Sbjct 781735 GGCGCCACTGGAAGCCGTACACCGGCCCGAGGTCCATCTCCTTATTCTCCGTCAGCCCAC 781676 Query 6975 GCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGA 7034 | |||| || || || || || |||| |||||||||| | | || | | | Sbjct 781675 GGCTGTCGAGGAACTCGCGGGAGCCGTTGCCGTCCCAGATGTGAATGTCCTTGTCTGCCA 781616 Query 7035 GCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCC 7094 || || | ||| || | || | | |||||| | ||||| ||| ||||| || Sbjct 781615 GCAGCTGCGCGTTTGTCTCGCCACGGAGGAACCAGATGAGCTCTTCGCAGACGCCACGCC 781556 Query 7095 AGTACACACGTTTCGTCGTCAGCAGCGGAA---ATTCGCCCCGAAGGTTGTATCGGGCCT 7151 || | || || ||||||||||||||||| | | | |||| || | | || || Sbjct 781555 AGAAGACGCGCTTCGTCGTCAGCAGCGGCAGCTGGTTGTCCCGCAGCGAGAAGCGCATCT 781496 Query 7152 GTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCCTTC 7198 | | |||||| | | || ||| || ||||| |||||| ||||| Sbjct 781495 GCGCGCCGAAGAGGCTGATGGTGCCGACGCCGGTGCGGTCCTCCTTC 781449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448259833697760