Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq26 168 2e-36 seq20 163 7e-35 seq21 161 2e-34 seq331 158 3e-33 >seq26 Length=613868 Score = 168 bits (186), Expect = 2e-36 Identities = 167/215 (78%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || ||||| || || | || || Sbjct 365973 AGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCC 366032 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| ||||| || ||||| || |||| || ||||||||| Sbjct 366033 TCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 366092 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| |||||||| ||||| ||||| ||| || |||||||| | |||| Sbjct 366093 TGGATCTTCGCCTTCACGTTCTCGATCGTGTC---GCTCGCCTCGACCTCGAGGGCGATC 366149 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || ||||| || || | |||||| Sbjct 366150 GTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 366184 >seq20 Length=1996037 Score = 163 bits (180), Expect = 7e-35 Identities = 166/215 (77%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || ||||| || || | || || Sbjct 1271134 AGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCC 1271193 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| ||||| || ||||| || |||| || ||||| ||| Sbjct 1271194 TCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCC 1271253 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| |||||||| ||||| ||||| ||| || |||||||| | |||| Sbjct 1271254 TGGATCTTCGCCTTCACGTTCTCGATCGTGTC---GCTCGCCTCGACCTCGAGGGCGATC 1271310 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || ||||| ||||| | |||||| Sbjct 1271311 GTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCAT 1271345 >seq21 Length=2191012 Score = 161 bits (178), Expect = 2e-34 Identities = 173/226 (77%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || ||||| || || | || || Sbjct 978814 AGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCC 978873 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| ||||| || ||||| || |||| || ||||||||| Sbjct 978874 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 978933 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||| ||||| | || ||||| || | ||| ||| Sbjct 978934 TGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTC 978993 Query 211083 TTTCCCGTGAGAGTCTTTAC-AAACACCTGCATTTT-ATGGTTACT 211126 || || || || ||||| || ||| | ||||||||| ||||| || Sbjct 978994 TTGCCGGTCAGCGTCTTCACGAAAGATCTGCATTTTGTTGGTTTCT 979039 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || ||||| || || | || || Sbjct 976990 AGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCC 977049 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| ||||| || ||||| || |||| || ||||||||| Sbjct 977050 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 977109 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||| ||||| | || ||||| || | ||| ||| Sbjct 977110 TGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTC 977169 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 977170 TTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 977201 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || ||||| || || | || || Sbjct 977218 AGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCC 977277 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| ||||| || ||||| || |||| || ||||||||| Sbjct 977278 TCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 977337 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||| ||||| | || ||||| || | ||| ||| Sbjct 977338 TGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTC 977397 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 977398 TTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 977429 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || ||||| || || | || || Sbjct 977446 AGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCC 977505 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| ||||| || ||||| || |||| || ||||||||| Sbjct 977506 TCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 977565 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||| ||||| | || ||||| || | ||| ||| Sbjct 977566 TGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTC 977625 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 977626 TTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 977657 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || ||||| || || | || || Sbjct 977674 AGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCC 977733 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| ||||| || ||||| || |||| || ||||||||| Sbjct 977734 TCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 977793 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||| ||||| | || ||||| || | ||| ||| Sbjct 977794 TGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTC 977853 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 977854 TTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 977885 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || ||||| || || | || || Sbjct 977902 AGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCC 977961 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| ||||| || ||||| || |||| || ||||||||| Sbjct 977962 TCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 978021 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||| ||||| | || ||||| || | ||| ||| Sbjct 978022 TGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTC 978081 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 978082 TTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 978113 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || ||||| || || | || || Sbjct 978130 AGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCC 978189 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| ||||| || ||||| || |||| || ||||||||| Sbjct 978190 TCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 978249 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||| ||||| | || ||||| || | ||| ||| Sbjct 978250 TGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTC 978309 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 978310 TTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 978341 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || ||||| || || | || || Sbjct 978358 AGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCC 978417 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| ||||| || ||||| || |||| || ||||||||| Sbjct 978418 TCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 978477 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||| ||||| | || ||||| || | ||| ||| Sbjct 978478 TGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTC 978537 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 978538 TTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 978569 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || ||||| || || | || || Sbjct 978586 AGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCC 978645 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| ||||| || ||||| || |||| || ||||||||| Sbjct 978646 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 978705 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||| ||||| | || ||||| || | ||| ||| Sbjct 978706 TGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTC 978765 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 978766 TTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 978797 >seq331 Length=20977 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || ||||| || || | || || Sbjct 8086 AGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCC 8145 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| ||||| || ||||| || |||| || ||||||||| Sbjct 8146 TCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 8205 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||| ||||| | || ||||| || | ||| ||| Sbjct 8206 TGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTC 8265 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 8266 TTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 8297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159145197951170