Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq331 111 1e-19 seq21 111 1e-19 seq26 105 6e-18 seq20 102 7e-17 >seq331 Length=20977 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||| | || |||||| ||| || || || || || || || || || || | Sbjct 8082 GCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCC 8141 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| ||||| || || ||||||||||| | ||| | || ||| || Sbjct 8142 CTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTT 8201 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| ||| || | || | | ||| ||||| | |||||| |||| || ||| Sbjct 8202 GTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGAT 8261 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||||||| || || ||||| ||||| Sbjct 8262 GGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 8297 >seq21 Length=2191012 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||| | || |||||| ||| || || || || || || || || || || | Sbjct 976986 GCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCC 977045 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| ||||| || || ||||||||||| | ||| | || ||| || Sbjct 977046 CTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTT 977105 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| ||| || | || | | ||| ||||| | |||||| |||| || ||| Sbjct 977106 GTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGAT 977165 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||||||| || || ||||| ||||| Sbjct 977166 GGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 977201 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||| | || |||||| ||| || || || || || || || || || || | Sbjct 977214 GCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCC 977273 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| ||||| || || ||||||||||| | ||| | || ||| || Sbjct 977274 CTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTT 977333 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| ||| || | || | | ||| ||||| | |||||| |||| || ||| Sbjct 977334 GTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGAT 977393 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||||||| || || ||||| ||||| Sbjct 977394 GGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 977429 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||| | || |||||| ||| || || || || || || || || || || | Sbjct 977442 GCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCC 977501 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| ||||| || || ||||||||||| | ||| | || ||| || Sbjct 977502 CTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTT 977561 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| ||| || | || | | ||| ||||| | |||||| |||| || ||| Sbjct 977562 GTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGAT 977621 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||||||| || || ||||| ||||| Sbjct 977622 GGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 977657 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||| | || |||||| ||| || || || || || || || || || || | Sbjct 977670 GCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCC 977729 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| ||||| || || ||||||||||| | ||| | || ||| || Sbjct 977730 CTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTT 977789 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| ||| || | || | | ||| ||||| | |||||| |||| || ||| Sbjct 977790 GTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGAT 977849 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||||||| || || ||||| ||||| Sbjct 977850 GGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 977885 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||| | || |||||| ||| || || || || || || || || || || | Sbjct 977898 GCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCC 977957 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| ||||| || || ||||||||||| | ||| | || ||| || Sbjct 977958 CTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTT 978017 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| ||| || | || | | ||| ||||| | |||||| |||| || ||| Sbjct 978018 GTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGAT 978077 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||||||| || || ||||| ||||| Sbjct 978078 GGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 978113 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||| | || |||||| ||| || || || || || || || || || || | Sbjct 978126 GCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCC 978185 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| ||||| || || ||||||||||| | ||| | || ||| || Sbjct 978186 CTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTT 978245 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| ||| || | || | | ||| ||||| | |||||| |||| || ||| Sbjct 978246 GTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGAT 978305 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||||||| || || ||||| ||||| Sbjct 978306 GGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 978341 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||| | || |||||| ||| || || || || || || || || || || | Sbjct 978354 GCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCC 978413 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| ||||| || || ||||||||||| | ||| | || ||| || Sbjct 978414 CTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTT 978473 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| ||| || | || | | ||| ||||| | |||||| |||| || ||| Sbjct 978474 GTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGAT 978533 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||||||| || || ||||| ||||| Sbjct 978534 GGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 978569 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||| | || |||||| ||| || || || || || || || || || || | Sbjct 978582 GCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCC 978641 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| ||||| || || ||||||||||| | ||| | || ||| || Sbjct 978642 CTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTT 978701 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| ||| || | || | | ||| ||||| | |||||| |||| || ||| Sbjct 978702 GTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGAT 978761 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||||||| || || ||||| ||||| Sbjct 978762 GGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 978797 Score = 109 bits (120), Expect = 5e-19 Identities = 157/220 (71%), Gaps = 1/220 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||| | || |||||| ||| || || || || || || || || || || | Sbjct 978810 GCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCC 978869 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| ||||| || || ||||||||||| | ||| | || ||| || Sbjct 978870 CTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTT 978929 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| ||| || | || | | ||| ||||| | |||||| |||| || ||| Sbjct 978930 GTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGAT 978989 Query 39249 ACTTTTTCCCGTCAGCGTTTTAAC-AAAGATTTGCATCTT 39287 | || || |||||||| || || |||||| ||||| || Sbjct 978990 GGTCTTGCCGGTCAGCGTCTTCACGAAAGATCTGCATTTT 979029 >seq26 Length=613868 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||| | || |||||| ||| || || || || || || || || || || | Sbjct 365969 GCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCC 366028 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| ||||| || || ||||||||||| | ||| | || ||| || Sbjct 366029 CTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTT 366088 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| ||| || | || | | ||| ||||||| ||| || || | | ||| Sbjct 366089 GTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCGACCTCGAGGGCGAT 366148 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || ||||||||||| || || ||||| ||||| Sbjct 366149 CGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 366184 >seq20 Length=1996037 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||| | || |||||| ||| || || || || || || || || || || | Sbjct 1271130 GCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCC 1271189 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| ||||| || || ||||||||||| | ||| | || ||| || Sbjct 1271190 CTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTT 1271249 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| ||| ||| || | || | | ||| ||||||| ||| || || | | ||| Sbjct 1271250 ATCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCGACCTCGAGGGCGAT 1271309 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||||||| || |||||||| ||||| Sbjct 1271310 CGTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCAT 1271345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429543202330154