Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq26 131 4e-25 seq331 123 6e-23 seq21 123 6e-23 seq20 122 2e-22 >seq26 Length=613868 Score = 131 bits (144), Expect = 4e-25 Identities = 155/209 (74%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || |||||||| || || || || || |||||| |||||||||| || ||| Sbjct 366181 CAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCGCCCTCGAGGTCGAGGCGAGC--- 366125 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| ||||||||||| || ||||| |||||||| || || || || ||||||||| Sbjct 366124 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 366065 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || ||||| ||||| || ||||| || || || | || || || || || ||| Sbjct 366064 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 366005 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 366004 ATCCAGAAGGAGTCCACGCTGCACCTCGT 365976 >seq331 Length=20977 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||| | || |||||||| | ||| Sbjct 8294 CAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCAGCGAC 8235 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || ||||| |||||||| || || || || ||||||||||| Sbjct 8234 ACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 8175 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| || || || | || || || || || ||| || Sbjct 8174 CGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAACATC 8115 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 8114 CAGAAGGAGTCCACGCTGCACCTCGT 8089 >seq21 Length=2191012 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||| | || |||||||| | ||| Sbjct 977426 CAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCAGCGAC 977367 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || ||||| |||||||| || || || || ||||||||||| Sbjct 977366 ACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 977307 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| || || || | || || || || || ||| || Sbjct 977306 CGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAACATC 977247 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 977246 CAGAAGGAGTCCACGCTGCACCTCGT 977221 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||| | || |||||||| | ||| Sbjct 977654 CAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCAGCGAC 977595 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || ||||| |||||||| || || || || ||||||||||| Sbjct 977594 ACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 977535 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| || || || | || || || || || ||| || Sbjct 977534 CGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAACATC 977475 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 977474 CAGAAGGAGTCCACGCTGCACCTCGT 977449 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||| | || |||||||| | ||| Sbjct 977882 CAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCAGCGAC 977823 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || ||||| |||||||| || || || || ||||||||||| Sbjct 977822 ACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 977763 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| || || || | || || || || || ||| || Sbjct 977762 CGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAACATC 977703 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 977702 CAGAAGGAGTCCACGCTGCACCTCGT 977677 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||| | || |||||||| | ||| Sbjct 978110 CAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCAGCGAC 978051 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || ||||| |||||||| || || || || ||||||||||| Sbjct 978050 ACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 977991 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| || || || | || || || || || ||| || Sbjct 977990 CGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAACATC 977931 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 977930 CAGAAGGAGTCCACGCTGCACCTCGT 977905 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||| | || |||||||| | ||| Sbjct 978338 CAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCAGCGAC 978279 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || ||||| |||||||| || || || || ||||||||||| Sbjct 978278 ACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 978219 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| || || || | || || || || || ||| || Sbjct 978218 CGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAACATC 978159 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 978158 CAGAAGGAGTCCACGCTGCACCTCGT 978133 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||| | || |||||||| | ||| Sbjct 978566 CAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCAGCGAC 978507 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || ||||| |||||||| || || || || ||||||||||| Sbjct 978506 ACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 978447 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| || || || | || || || || || ||| || Sbjct 978446 CGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAACATC 978387 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 978386 CAGAAGGAGTCCACGCTGCACCTCGT 978361 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||| | || |||||||| | ||| Sbjct 977198 CAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCAGCGAC 977139 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || ||||| |||||||| || || || || ||||||||||| Sbjct 977138 ACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 977079 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| || || || | || || || || || ||| || Sbjct 977078 CGCCTGATCTTTGCTGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAACATC 977019 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 977018 CAGAAGGAGTCCACGCTGCACCTCGT 976993 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||| | || |||||||| | ||| Sbjct 978794 CAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCAGCGAC 978735 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || ||||| |||||||| || || || || ||||||||||| Sbjct 978734 ACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 978675 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| || || || | || || || || || ||| || Sbjct 978674 CGCCTGATCTTTGCTGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAACATC 978615 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 978614 CAGAAGGAGTCCACGCTGCACCTCGT 978589 Score = 120 bits (132), Expect = 7e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||||||||| || || || || || || ||| | || |||||||| | ||||| || Sbjct 979017 TTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCAGCGACACGAT 978958 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||||||||| || ||||| |||||||| || || || || ||||||||||| || || Sbjct 978957 CGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCT 978898 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||| || || || ||||| || || || | || || || || || ||| |||| || Sbjct 978897 GATCTTTGCTGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAACATCCAGAA 978838 Query 178109 AGAATCAACACTGCATCTTGT 178129 || || || ||||| || || Sbjct 978837 GGAGTCCACGCTGCACCTCGT 978817 >seq20 Length=1996037 Score = 122 bits (134), Expect = 2e-22 Identities = 153/209 (73%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || || ||||| || || || || || |||||| |||||||||| || ||| Sbjct 1271342 CAGATCTTTGTGAAGACGCTGACCGGCAAGACGATCGCCCTCGAGGTCGAGGCGAGC--- 1271286 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| ||||||||||| || ||||| ||||| || || || || || ||||||||| Sbjct 1271285 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATTCCCCCGGACCAG 1271226 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || ||||| ||||| || ||||| || || || | || || || || || ||| Sbjct 1271225 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 1271166 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 1271165 ATCCAGAAGGAGTCCACGCTGCACCTCGT 1271137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203724136354852