Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq8796 100 6e-16 seq6209 100 6e-16 SEQ11243 93.3 9e-14 SEQ11242 93.3 9e-14 SEQ11241 93.3 9e-14 seq1102 93.3 9e-14 >seq8796 Length=7791 Score = 100 bits (110), Expect = 6e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGA 230475 |||||||| || ||||| | || || || || ||||||||||| || || ||| Sbjct 7555 GAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAACGCGGAGCTGATGTCG 7614 Query 230476 CAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTAC 230535 ||||||||||| ||||| || ||||| | | || | || || ||||| ||| Sbjct 7615 CAGTACATCGAGTTCGTTGCGGACCGGCTGCTGGTGTCGCTGGGGCTGGAGAAGCACTAC 7674 Query 230536 AACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTC 230595 ||| | | | ||||| | || |||||| | || ||||| || || ||||| |||||| Sbjct 7675 AACGTGACGCAGCCCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 7734 Query 230596 TTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGA 230638 ||||| ||| || | || || |||| | |||| ||||||| Sbjct 7735 TTCGAGAAGAAGGTTGGCGAGTACCAGAAGGCTGGCGTGATGA 7777 >seq6209 Length=3470 Score = 100 bits (110), Expect = 6e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGA 230475 |||||||| || ||||| | || || || || ||||||||||| || || ||| Sbjct 453 GAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAACGCGGAGCTGATGTCG 512 Query 230476 CAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTAC 230535 ||||||||||| ||||| || ||||| | | || | || || ||||| ||| Sbjct 513 CAGTACATCGAGTTCGTTGCGGACCGGCTGCTGGTGTCGCTGGGGCTGGAGAAGCACTAC 572 Query 230536 AACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTC 230595 ||| | | | ||||| | || |||||| | || ||||| || || ||||| |||||| Sbjct 573 AACGTGACGCAGCCCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 632 Query 230596 TTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGA 230638 ||||| ||| || | || || |||| | |||| ||||||| Sbjct 633 TTCGAGAAGAAGGTTGGCGAGTACCAGAAGGCTGGCGTGATGA 675 >SEQ11243 Length=5724 Score = 93.3 bits (102), Expect = 9e-14 Identities = 124/168 (74%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 281736 AGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCA 281795 |||||||||||||| || | | |||||||| |||||| |||| | | ||| || Sbjct 3151 AGTTTCGTGAAGATGTAGCGCGGCGCGGCGTGGTCGTTACCAAGCTGCTGACGCGAGCCG 3092 Query 281796 AACTGACCCTCCGGCAACAACCAG-TTAATGTTATTGCTCCCGACGTAA--TCCTGAGCC 281852 ||||| |||||||| || | ||| || ||||| |||| || ||||| | ||| ||| Sbjct 3091 AACTGGCCCTCCGG-GACGAGCAGATTGATGTTGTTGCCACC--CGTAAAGTTCTGCGCC 3035 Query 281853 AGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCG 281900 | || ||||| ||| |||| ||||| |||| |||||||| ||||| Sbjct 3034 ATCTTCACGATGGTCTCCTGCAGCGACGCCTCTCCGTGGTGGAAGGCG 2987 >SEQ11242 Length=6155 Score = 93.3 bits (102), Expect = 9e-14 Identities = 124/168 (74%), Gaps = 6/168 (4%) Strand=Plus/Plus Query 281736 AGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCA 281795 |||||||||||||| || | | |||||||| |||||| |||| | | ||| || Sbjct 1933 AGTTTCGTGAAGATGTAGCGCGGCGCGGCGTGGTCGTTACCAAGCTGCTGACGCGAGCCG 1992 Query 281796 AACTGACCCTCCGGCAACAACCAG-TTAATGTTATTGCTCCCGACGTAA--TCCTGAGCC 281852 ||||| |||||||| || | ||| || ||||| |||| || ||||| | ||| ||| Sbjct 1993 AACTGGCCCTCCGG-GACGAGCAGATTGATGTTGTTGCCACC--CGTAAAGTTCTGCGCC 2049 Query 281853 AGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCG 281900 | || ||||| ||| |||| ||||| |||| |||||||| ||||| Sbjct 2050 ATCTTCACGATGGTCTCCTGCAGCGACGCCTCTCCGTGGTGGAAGGCG 2097 >SEQ11241 Length=6144 Score = 93.3 bits (102), Expect = 9e-14 Identities = 124/168 (74%), Gaps = 6/168 (4%) Strand=Plus/Plus Query 281736 AGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCA 281795 |||||||||||||| || | | |||||||| |||||| |||| | | ||| || Sbjct 1933 AGTTTCGTGAAGATGTAGCGCGGCGCGGCGTGGTCGTTACCAAGCTGCTGACGCGAGCCG 1992 Query 281796 AACTGACCCTCCGGCAACAACCAG-TTAATGTTATTGCTCCCGACGTAA--TCCTGAGCC 281852 ||||| |||||||| || | ||| || ||||| |||| || ||||| | ||| ||| Sbjct 1993 AACTGGCCCTCCGG-GACGAGCAGATTGATGTTGTTGCCACC--CGTAAAGTTCTGCGCC 2049 Query 281853 AGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCG 281900 | || ||||| ||| |||| ||||| |||| |||||||| ||||| Sbjct 2050 ATCTTCACGATGGTCTCCTGCAGCGACGCCTCTCCGTGGTGGAAGGCG 2097 >seq1102 Length=5703 Score = 93.3 bits (102), Expect = 9e-14 Identities = 124/168 (74%), Gaps = 6/168 (4%) Strand=Plus/Plus Query 281736 AGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCA 281795 |||||||||||||| || | | |||||||| |||||| |||| | | ||| || Sbjct 2553 AGTTTCGTGAAGATGTAGCGCGGCGCGGCGTGGTCGTTACCAAGCTGCTGACGCGAGCCG 2612 Query 281796 AACTGACCCTCCGGCAACAACCAG-TTAATGTTATTGCTCCCGACGTAA--TCCTGAGCC 281852 ||||| |||||||| || | ||| || ||||| |||| || ||||| | ||| ||| Sbjct 2613 AACTGGCCCTCCGG-GACGAGCAGATTGATGTTGTTGCCACC--CGTAAAGTTCTGCGCC 2669 Query 281853 AGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCG 281900 | || ||||| ||| |||| ||||| |||| |||||||| ||||| Sbjct 2670 ATCTTCACGATGGTCTCCTGCAGCGACGCCTCTCCGTGGTGGAAGGCG 2717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057620252188790