Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq8796 414 1e-110 seq6209 286 4e-72 SEQ14990 163 3e-35 seq3668 163 3e-35 seq6451 150 2e-31 seq5330 131 2e-25 >seq8796 Length=7791 Score = 414 bits (458), Expect = 1e-110 Identities = 599/829 (72%), Gaps = 20/829 (2%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||| | || || || || ||| | |||| | ||||| || |||| ||| Sbjct 6859 GAGCCGCTACAGCAGGAAAATCCGTTCCGCTACGTGCTGTTCCCGATTGTCTACCACGAC 6918 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||||||| |||||| || ||| | ||||||| | |||||| | ||||| Sbjct 6919 ATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGCTGGAGGAGATCGACCTC 6978 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 ||| |||| || ||||||||| | |||||||| ||||| || |||||||||||| Sbjct 6979 GGCAACGACATGAAGGACTGGGAGAGGCTGAACGACGGGGAGCGGCACTTCATCAAGCAC 7038 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 |||||||| || || |||| ||||||||||||||| | ||||| |||| |||| ||| Sbjct 7039 GTGCTGGCGTTCTTTGCCGGCAGCGACGGCATCGTGATTGAGAACCTGGCGCAGCGCTTC 7098 Query 116816 GCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 | || || ||| ||||| | |||||||| |||||||| || ||| | ||||| Sbjct 7099 -ATGAGCGACGTGAAGGTGCCGGAGGCGCGCGCGTTCTACGGGTTCCAGCTGATGATGGA 7157 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT-GCGCTCTTCGGAGG 116933 |||| | |||||||| | ||| ||| || | ||||||||| | || | | |||| Sbjct 7158 GAACATCCACTCGGAGACGTACTCGGTGCTGCTGGACACGTACATCACGGACAGC-GAGG 7216 Query 116934 AGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGT 116993 ||||||| || || || |||| ||| ||||||| |||||| || | ||||||| |||| Sbjct 7217 AGAAGCTGCGGCTGCTGCACGCGATCCAGACGATCCCGTGCATCCAGAAGAAGGCGGAGT 7276 Query 116994 GGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCG 117053 |||| |||| ||||| ||| || | || |||| ||||| ||| | | |||| Sbjct 7277 GGGCTGTGCGGTGGAT---CGGGAGCGGCGCGAGCTTCCAGGAGCGGCTGATCGGGTTCG 7333 Query 117054 CGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAAC 117113 |||| || |||||| ||||||| ||||| ||| ||| | || ||||| ||||| | Sbjct 7334 CGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGC 7393 Query 117114 GCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGC 117173 |||| || ||||| || ||||| |||||||||||||| ||||| | |||||||| |||| Sbjct 7394 GCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGGCTGC 7453 Query 117174 ATTGCGACTTTGCCTGTTTGCTGTTCAA---GCATTTGGTGCAGCGACCGAGCGCG-GCG 117229 | ||||| || || |||||| ||| ||| | ||| | | | |||| | | Sbjct 7454 ACACGGACTTCGCGTGCCTGCTGTACAACTCGCACATCAAGCA-CAAGCTGCCGCGCGAG 7512 Query 117230 CGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCG-CTTCCTCACCGAAGC 117288 ||||| ||||||| || |||||||| |||||||| ||| ||| || ||| || Sbjct 7513 CGCGTGCTGGAGATCATCGTGGACGCGGTGAACATCGAGC-GCGAGTTCATCTGCGACGC 7571 Query 117289 GCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCG 117347 |||||||||||| ||| | || | || ||| | | ||||||||| ||||||||||||| Sbjct 7572 GCTGCCGGTGCGGCTGATCGGCATGAA-CGCGGAGCTGATGTCGCAGTACATCGAGTTCG 7630 Query 117348 TCGCCGACAGGCTGCTGCTCGAGCTGGTCGGC--GCCAAGCACTACAAC 117394 | || ||| |||||||| | ||||| ||| | |||||||||||| Sbjct 7631 TTGCGGACCGGCTGCTGGTGTCGCTGG--GGCTGGAGAAGCACTACAAC 7677 >seq6209 Length=3470 Score = 286 bits (316), Expect = 4e-72 Identities = 421/582 (72%), Gaps = 18/582 (3%) Strand=Plus/Plus Query 116822 GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTG 116881 || ||| ||||| | |||||||| |||||||| || ||| | ||||||||| | Sbjct 3 GACGTGAAGGTGCCGGAGGCGCGCGCGTTCTACGGGTTCCAGCTGATGATGGAGAACATC 62 Query 116882 CACTCGGAAATGTATTCGACCCTCATCGACACGTACGTG-CGCTCTTCGGAGGAGAAGCT 116940 |||||||| | ||| ||| || | ||||||||| | || | || |||||||||| Sbjct 63 CACTCGGAGACGTACTCGGTGCTGCTGGACACGTACATCACGGACAGCG-AGGAGAAGCT 121 Query 116941 CCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCT 117000 || || || |||| ||| ||||||| |||||| || | ||||||| |||||||| | Sbjct 122 GCGGCTGCTGCACGCGATCCAGACGATCCCGTGCATCCAGAAGAAGGCGGAGTGGGCTGT 181 Query 117001 GCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGT 117060 ||| ||||||| | || | || |||| ||||| ||| | | |||||||| || Sbjct 182 GCGGTGGATCG---GGAGCGGCGCGAGCTTCCAGGAGCGGCTGATCGGGTTCGCGGCGGT 238 Query 117061 CGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCT 117120 |||||| ||||||| ||||| ||| ||| | || ||||| ||||| ||||| || Sbjct 239 GGAGGGCATCTTCTTCTCGGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGGCT 298 Query 117121 CATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGA 117180 ||||| || ||||| |||||||||||||| ||||| | |||||||| ||||| || Sbjct 299 GATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGGCTGCACACGGA 358 Query 117181 CTTTGCCTGTTTGCTGTTCAA---GCATTTGGTGCAGCGACCGAGCGCG-GCGCGCGTCA 117236 ||| || || |||||| ||| ||| | ||| | | | |||| | |||||| Sbjct 359 CTTCGCGTGCCTGCTGTACAACTCGCACATCAAGCA-CAAGCTGCCGCGCGAGCGCGTGC 417 Query 117237 GGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCG-CTTCCTCACCGAAGCGCTGCCG 117295 ||||||| || |||||||| |||||||| ||| ||| || ||| ||||||||| Sbjct 418 TGGAGATCATCGTGGACGCGGTGAACATCGAGC-GCGAGTTCATCTGCGACGCGCTGCCG 476 Query 117296 GTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCGTCGCCGA 117354 ||||| ||| | || | || ||| | | ||||||||| |||||||||||||| || || Sbjct 477 GTGCGGCTGATCGGCATGAA-CGCGGAGCTGATGTCGCAGTACATCGAGTTCGTTGCGGA 535 Query 117355 CAGGCTGCTGCTCGAGCTGGTCGGC--GCCAAGCACTACAAC 117394 | |||||||| | ||||| ||| | |||||||||||| Sbjct 536 CCGGCTGCTGGTGTCGCTGG--GGCTGGAGAAGCACTACAAC 575 >SEQ14990 Length=15354 Score = 163 bits (180), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| ||||| | | || ||||| |||| | Sbjct 8954 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATTGCGCTGGAGGTCGAGGCCAGC 9013 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || |||| ||||| ||||||||||| ||||||| Sbjct 9014 GACACGATCGAGAACG-TGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCA 9072 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | ||||| ||| |||||||| Sbjct 9073 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAA 9132 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | |||||||| || ||| ||||| || | || ||| Sbjct 9133 CATCCAGAAGGAGTCGACGCTGCACCTNGTGCTGCGCCTGCGCGGTGGC 9181 >seq3668 Length=3103 Score = 163 bits (180), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || || ||| || |||| ||||| || | | Sbjct 387 ATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACGATCGCCCTCGAGGTCGAGGCGAGC 328 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || |||| ||||| ||||||||||| ||||||| Sbjct 327 GACACCATCGAGAACG-TGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCA 269 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | ||||| ||| |||||||| Sbjct 268 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAA 209 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | |||||||| || ||| ||||| || | || ||| Sbjct 208 CATCCAGAAGGAGTCGACGCTGCACCTCGTGCTGCGCCTGCGCGGTGGC 160 >seq6451 Length=1481 Score = 150 bits (166), Expect = 2e-31 Identities = 165/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || || ||| || |||| ||||| || | | Sbjct 217 ATGCAGATCTTTGTGAAGACCCTGACCGGTAAGACGATCGCCCTCGAGGTCGAGGCGAGC 158 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || |||| ||||| ||||||||||| ||||||| Sbjct 157 GACACCATCGAGAACG-TGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCA 99 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| |||||||| || | ||||| ||| |||||||| Sbjct 98 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAAGAGGGCCGCACGCTCGCGGACTACAA 39 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||||||| | |||||||| || ||| ||||| Sbjct 38 CATCCAGAAGGAGTCGACGCTGCACCTCGTGCTGCGC 2 >seq5330 Length=12009 Score = 131 bits (144), Expect = 2e-25 Identities = 119/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 40768 AAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCG 40827 |||| || |||| ||||| ||||||||||| |||||||||| || || |||| ||| Sbjct 6 AAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCTGATCTTCGCC 65 Query 40828 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACG 40887 ||||| |||||||| || | ||||| ||| ||||||||||||||||||||| | ||| Sbjct 66 GGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAACATCCAGAAGGAGTCGACG 125 Query 40888 CTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||| || ||| ||||| || | || ||| Sbjct 126 CTGCACCTCGTGCTGCGCCTGCGCGGTGGC 155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515122383872080