Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3668 114 1e-20 SEQ14990 111 1e-19 seq6451 109 5e-19 seq9113 91.5 1e-13 >seq3668 Length=3103 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | || ||| | ||| | || ||||| || || |||||||| || Sbjct 161 CCACCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 220 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||| ||||| || || ||| |||| || |||||||| || || || Sbjct 221 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 280 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| ||| || || || | |||| |||||| | ||||||| Sbjct 281 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACC 340 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| || | ||| || |||||||| || || || || ||||||||| Sbjct 341 TCGAGGGCGATCGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCATG 388 >SEQ14990 Length=15354 Score = 111 bits (122), Expect = 1e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | || ||| | ||| | || ||||| || || |||||||| || Sbjct 9180 CCACCGCGCAGGCGCAGCACNAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 9121 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||| ||||| || |||||| |||| || |||||||| || || || Sbjct 9120 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 9061 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| ||| || || || | |||| ||||| || ||||||| Sbjct 9060 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCGACC 9001 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || | | | || ||||||||||| || || || || ||||||||| Sbjct 9000 TCCAGCGCAATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 8953 >seq6451 Length=1481 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||| | ||| | || ||||| || || |||||||| || | ||||| || Sbjct 5 CAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTC 64 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || || || |||| || |||||||| || || || |||||||||||||| Sbjct 65 TTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTC 124 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || || || | |||| |||||| | ||||||||||| || | ||| Sbjct 125 CTGAATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCGT 184 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 || |||||||| || || ||||| |||||||||| Sbjct 185 CTTACCGGTCAGGGTCTTCACAAAGATCTGCATGG 219 >seq9113 Length=16536 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 133127 GTCAATGTTCTGCACGGACCCGTTTTCGGCCAAAATCTTGTTGCGCAATTCCGGAGTGTA 133186 ||| ||| || ||||||| ||||| | || | |||| |||||||| | | | | Sbjct 6913 GTCGATGGTCAGCACGGAGCCGTTGTAGGAGATGATCTCGTTGCGCATCGTCTCATTCCA 6854 Query 133187 AATGTCGAGATCGATTAGCGCTTTGACGAGATACTGGTTGACCACTTGAAACTCGCCGGC 133246 | | || | | || || | | ||||| |||| ||| ||||| | ||||||||| Sbjct 6853 CAGGCCGCGCTTAATGAGGTCCATCACGAGGTACTTGTTCACCACCGGGAACTCGCCGCT 6794 Query 133247 GAGAACGCGTCTGAGATATACATTCGACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAG 133306 || ||||| | | ||| | ||||| ||||| || ||||| | |||||||||||||| Sbjct 6793 CAGCACGCGACGAACATAGATGTTCGAGGTGAAAGGCTCGAAGCACTCGTTGTTGCCGAG 6734 Query 133307 TATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACCAACAAAGAGTT 133354 || |||| |||| || |||||||| ||| | || | |||||| Sbjct 6733 GATTTGCGAGGTCGAGGCGGTGGGCATCGGCGCAAGCAGGAGAGAGTT 6686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433750915898836