Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value SEQ14990 118 1e-21 seq6451 104 3e-17 seq3668 104 3e-17 SEQ14995 91.5 2e-13 SEQ13962 89.7 6e-13 SEQ12304 89.7 6e-13 seq4300 89.7 6e-13 seq2234 89.7 6e-13 seq1836 89.7 6e-13 >SEQ14990 Length=15354 Score = 118 bits (130), Expect = 1e-21 Identities = 168/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010 ||||| || || | | |||| ||| | |||| || |||||| || || ||||| Sbjct 9186 TATTGGCCACCGCGCAGGCGCAGCACNAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAG 9127 Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 || || || || || | || || |||||||| |||||||| || || ||||||||||| Sbjct 9126 TCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCC 9067 Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGA 43129 | ||| | || |||||||||| ||| | || | || | || | | ||||||||| | Sbjct 9066 GGCGGGATGCCCTCCTTGTCC-TGAATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGC 9008 Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || | || ||||| ||||| || |||||||| || ||||| ||||| Sbjct 9007 CTCGACCTCCAGCGCAATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 8954 >seq6451 Length=1481 Score = 104 bits (114), Expect = 3e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||| | |||| || |||||| || || ||||| || || || || || | Sbjct 3 CGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 62 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || || || ||||||||||| | ||| | || ||||||| Sbjct 63 TCTTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 122 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| | || | || | || | | |||||||||| || || |||| | ||| Sbjct 123 TCC-TGAATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGAT 181 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || || ||||| |||||||| ||||| Sbjct 182 CGTCTTACCGGTCAGGGTCTTCACAAAGATCTGCAT 217 >seq3668 Length=3103 Score = 104 bits (114), Expect = 3e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||| | |||| || |||||| || || ||||| || || || || || | Sbjct 173 CGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 232 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || ||||| || || ||||||||||| | ||| | || ||||||| Sbjct 233 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 292 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| | || | || | || | | |||||||||| || || |||| | ||| Sbjct 293 TCC-TGAATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGAT 351 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || || ||||| || ||||| ||||| Sbjct 352 CGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 387 >SEQ14995 Length=4909 Score = 91.5 bits (100), Expect = 2e-13 Identities = 72/86 (84%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 60050 GTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCG 60109 |||| ||||||| ||| | ||| |||||| |||||| |||| ||||||||||||||| Sbjct 3875 GTTTCTGAAAAAGCTTCCC---GGCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCG 3819 Query 60110 GACATACTCACCACTATACTACCGAG 60135 | ||||| ||||||||||||||||| Sbjct 3818 GGTATACTAACCACTATACTACCGAG 3793 >SEQ13962 Length=3791 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| |||| |||||||||||||||| ||||| |||||||||||| Sbjct 3682 CGGCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTATACTA 3623 Query 60131 CCGAGGATTGAA 60142 ||||| | |||| Sbjct 3622 CCGAGAACTGAA 3611 >SEQ12304 Length=1676 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| |||| |||||||||||||||| ||||| |||||||||||| Sbjct 1313 CGGCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTATACTA 1372 Query 60131 CCGAGGATTGAA 60142 ||||| | |||| Sbjct 1373 CCGAGAACTGAA 1384 >seq4300 Length=1430 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| |||| |||||||||||||||| ||||| |||||||||||| Sbjct 262 CGGCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTATACTA 321 Query 60131 CCGAGGATTGAA 60142 ||||| | |||| Sbjct 322 CCGAGAACTGAA 333 >seq2234 Length=1677 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| |||| |||||||||||||||| ||||| |||||||||||| Sbjct 364 CGGCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTATACTA 305 Query 60131 CCGAGGATTGAA 60142 ||||| | |||| Sbjct 304 CCGAGAACTGAA 293 >seq1836 Length=1968 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| |||| |||||||||||||||| ||||| |||||||||||| Sbjct 632 CGGCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTATACTA 573 Query 60131 CCGAGGATTGAA 60142 ||||| | |||| Sbjct 572 CCGAGAACTGAA 561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571710148325240