Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq8796 122 2e-22 seq6209 122 2e-22 seq9113 113 1e-19 >seq8796 Length=7791 Score = 122 bits (134), Expect = 2e-22 Identities = 356/533 (67%), Gaps = 28/533 (5%) Strand=Plus/Minus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| | || | ||||| || ||||| ||||| ||||| || || ||||| ||||| Sbjct 7758 GTACTCGCCAACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCAT 7699 Query 157318 CCACTCGAATGGGTTGGCGCA-GTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGT 157376 | ||||| ||| || || |||||| ||| || ||||||| |||| Sbjct 7698 GAAGTCGAA-GGGCTGCGTCACGTTGTAGTGCTTCTCCAGCCCCAGCGACACCAGCAGCC 7640 Query 157377 AGTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGA 157436 |||||| || |||| |||||||| | ||| || | || | || ||||| ||| | Sbjct 7639 GGTCCGCAACGAACTCGATGTACTGCGACATCAGCTCCGCGTTCATGCCGATCAGCCGCA 7580 Query 157437 CGGGAAGCGCCGACGAA-ATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTCA 157495 | || ||||| | || | ||||| |||| ||| | | | || |||| | || || || Sbjct 7579 CCGGCAGCGC-GTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCCACGATGATCTCC 7521 Query 157496 TGAACTCTCTCCCGCGGCAGCCTATTCTTGAGATGC---TTGTAGATGAGA-ACG-GAAG 157550 | || | ||| ||||||||| | | ||||| ||| ||||| | || ||| |||| Sbjct 7520 AGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGAGTTGTACAGCAGGCACGCGAAG 7461 Query 157551 -CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACCCTTG 157609 ||||| || || || ||||| | | ||| || ||| ||||| || ||| | Sbjct 7460 TCCGTG---TGCAGCCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAG-CCCAGG 7405 Query 157610 AACTTCTGCC---GCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACG 157666 | || ||| |||||||||||||| | | |||||||||||||| ||| | | Sbjct 7404 CA--TCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCCGAGAAGAAGATG 7347 Query 157667 CCCTCCAGACAGGTGAAGCCGACTAGCCTCTCCGCGAGTGAAGCGGTTTCGGGGTTC--- 157723 ||||||| | ||| |||| |||| |||| ||||| | || | || Sbjct 7346 CCCTCCACCGCCGCGAACCCGATCAGCCGCTCC----TGGAAGC--TCGCGCCGCTCCCG 7293 Query 157724 ATCCACTTCTCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCATCGTCTGGAT 157776 |||||| | | ||||| ||||||||| | |||| || ||||||||||| Sbjct 7292 ATCCACCGCACAGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGAT 7240 >seq6209 Length=3470 Score = 122 bits (134), Expect = 2e-22 Identities = 356/533 (67%), Gaps = 28/533 (5%) Strand=Plus/Minus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| | || | ||||| || ||||| ||||| ||||| || || ||||| ||||| Sbjct 656 GTACTCGCCAACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCAT 597 Query 157318 CCACTCGAATGGGTTGGCGCA-GTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGT 157376 | ||||| ||| || || |||||| ||| || ||||||| |||| Sbjct 596 GAAGTCGAA-GGGCTGCGTCACGTTGTAGTGCTTCTCCAGCCCCAGCGACACCAGCAGCC 538 Query 157377 AGTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGA 157436 |||||| || |||| |||||||| | ||| || | || | || ||||| ||| | Sbjct 537 GGTCCGCAACGAACTCGATGTACTGCGACATCAGCTCCGCGTTCATGCCGATCAGCCGCA 478 Query 157437 CGGGAAGCGCCGACGAA-ATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTCA 157495 | || ||||| | || | ||||| |||| ||| | | | || |||| | || || || Sbjct 477 CCGGCAGCGC-GTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCCACGATGATCTCC 419 Query 157496 TGAACTCTCTCCCGCGGCAGCCTATTCTTGAGATGC---TTGTAGATGAGA-ACG-GAAG 157550 | || | ||| ||||||||| | | ||||| ||| ||||| | || ||| |||| Sbjct 418 AGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGAGTTGTACAGCAGGCACGCGAAG 359 Query 157551 -CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACCCTTG 157609 ||||| || || || ||||| | | ||| || ||| ||||| || ||| | Sbjct 358 TCCGTG---TGCAGCCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAG-CCCAGG 303 Query 157610 AACTTCTGCC---GCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACG 157666 | || ||| |||||||||||||| | | |||||||||||||| ||| | | Sbjct 302 CA--TCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCCGAGAAGAAGATG 245 Query 157667 CCCTCCAGACAGGTGAAGCCGACTAGCCTCTCCGCGAGTGAAGCGGTTTCGGGGTTC--- 157723 ||||||| | ||| |||| |||| |||| ||||| | || | || Sbjct 244 CCCTCCACCGCCGCGAACCCGATCAGCCGCTCC----TGGAAGC--TCGCGCCGCTCCCG 191 Query 157724 ATCCACTTCTCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCATCGTCTGGAT 157776 |||||| | | ||||| ||||||||| | |||| || ||||||||||| Sbjct 190 ATCCACCGCACAGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGAT 138 >seq9113 Length=16536 Score = 113 bits (124), Expect = 1e-19 Identities = 556/866 (64%), Gaps = 28/866 (3%) Strand=Plus/Plus Query 248877 GATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGA 248936 ||| |||||||| ||||| | || |||| || || |||| || ||| | || Sbjct 5380 GATTGTGGAACGCCCGCAGCAGCTCTTCCTGCGCGTTGCCCTCGGCATCCACGTCGGCGA 5439 Query 248937 CATAGAGAGCGTGCTCGAGACGTAC-ACCGGAATGAGTGAACGCTGGATGACACATGCCA 248995 | | ||| ||||| ||||||||| | | || || | ||| | || || |||| Sbjct 5440 CCTCAAGAACGTGCGTGAGACGTACGATCTGA-TGTCGAAGGGCTTTTTCACGCACGCCA 5498 Query 248996 CACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTG 249055 | ||||| |||||||||||||| || || ||| ||||||||||||| || | | Sbjct 5499 CCCCGACCCTCTTCAACGCCGGCACACCAAAGCCGCAGATGAGCTCGTGCTTCCTCGTCG 5558 Query 249056 CCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTT 249115 | | | |||||| | ||||| ||||| |||||||| || || || || Sbjct 5559 CGTCGAAGGACGACAGCATTGACGGGATTTACGACACGCTGAAGGAGTGCGCCGTCATCA 5618 Query 249116 CTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACA 249175 || || ||||| ||||| || ||| ||||||||| | || |||| Sbjct 5619 GCAAGGCGGCCGGCGGCATCGGCCTGCACGTGCACAACATCCGCTCCGCCGGCAGCTACA 5678 Query 249176 TCAAAGGTACAAATGGG--GTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTC 249233 || || || || || ||| | || | || || | || || || | Sbjct 5679 TCGCTGGCACGAACGGCACGTCGA--ACGGCCTGGTGCCGATGCTGCGCGTGTTCAACAA 5736 Query 249234 CACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTT 249290 ||| ||| | | | | |||||| ||| | || ||||| | |||||||| || | Sbjct 5737 CACGGCCCGCTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCATTTACCT 5796 Query 249291 GGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGA 249350 || |||||||||||| || || | |||||| |||| |||| |||||| || Sbjct 5797 CGAGCCGTGGCACGCCGACATCTTCGGCTTCCTGCTGCTGAAGCGCAACACCGGCAAGGA 5856 Query 249351 GCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCG 249410 | | | ||||| ||||||||||||| |||||| || ||||| |||||||| || Sbjct 5857 CGACCAGCGTGCGCGCGACCTCTTCTACGCGCTGTGGATCCCCGACCTGTTCATGAAGCG 5916 Query 249411 CGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACG-CCCCGGACCTCATCG 249469 ||| ||| || || | |||||||| | || | ||| ||||| ||||| || Sbjct 5917 CGTGAAGAGTGAGGGGAAGTGGACGCTGATGGACCCAAGC-ACGTGCCCGGGCCTCAGCG 5975 Query 249470 ATCTAC-ACGGCGCCGACTTCGACCAAGCC--TATAAGAAATACGAATCCAACGGCATCG 249526 | || | |||||| || ||||| | ||| ||| || ||||| | | ||| || Sbjct 5976 A-CTGCTACGGCGAGGAGTTCGAGC--GCCTGTATGAGCGCTACGAGGCGGAGGGCCGCG 6032 Query 249527 G---CAAGACAATCAAGGCTC-GGACCCTT--TTTGCGAAGGTGGTGGAGTCCCAGATAG 249580 | |||| ||| |||| | ||| | ||||||| | | ||||| ||||| | Sbjct 6033 GAGTGCAGACGATCCAGGCACAGGAGGTGTGGTTTGCGA---TTCTCGAGTCGCAGATCG 6089 Query 249581 AGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACGG 249639 |||| || | |||| | || | | ||| |||||||||||| |||| ||||| | Sbjct 6090 AGACCGGCGTCCCGT-TCATCCTCTACAAGGACGCGTGCAACAGCAAGTCGAACCAGAAG 6148 Query 249640 CATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATACTCGTCCAAG 249699 | || || |||||| | || || ||||| | ||| | | | ||| |||| | Sbjct 6149 AACCTCGGCACCATCAAGTGCTCGAACCTCTGCACCGAGATTGTGGAGTACACGTCGCCG 6208 Query 249700 GAGGAGATTGCCGTCTGCAACCTGGC 249725 ||||||| || || |||||||| || Sbjct 6209 GAGGAGACCGCGGTGTGCAACCTCGC 6234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073559581518144