Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq9113 334 7e-87 seq8796 255 5e-63 seq6209 246 3e-60 seq3668 96.9 3e-15 seq6451 93.3 4e-14 SEQ14990 84.2 2e-11 >seq9113 Length=16536 Score = 334 bits (370), Expect = 7e-87 Identities = 554/792 (70%), Gaps = 6/792 (1%) Strand=Plus/Minus Query 23020 GGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTC 23079 |||||| ||||| || ||||| || || ||| || ||||||||||| ||||| || Sbjct 6244 GGCGATGGAGGCGAGGTTGCACACCGCGGTCTCCTCCGGCGACGTGTACTCCACAATCTC 6185 Query 23080 GGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCA 23139 ||| || || || ||||| || ||||| | || ||||||| || | ||||| Sbjct 6184 GGTGCAGAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCTGTTGCA 6125 Query 23140 CGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCG 23199 || ||||||||||| ||| |||| ||| ||||||| ||||||||||| ||||| Sbjct 6124 CGCGTCCTTGTAGAGGATGAACGGGACGCCGGTCTCGATCTGCGACTCGAGAATCGCAAA 6065 Query 23200 CCACATAGTCTGAGCGTGAACACGTC-GCACGTACCTGCCTTCTTCCTCGTACTTTTGGT 23258 ||||| ||| || || | |||| |||| | ||| || ||||||| | | Sbjct 6064 CCACACCTCCTGTGCCTGGAT-CGTCTGCACTCCGCGGCCCTCCGCCTCGTAGCGCTCAT 6006 Query 23259 ACAACGCG-TCAAATTCGGCACCGTAACAGTCGGCCAGGCC-GGGCGATTGCATCGGACA 23316 ||| ||| || || || | ||||| |||||| ||||| |||| ||| | || | Sbjct 6005 ACAG-GCGCTCGAACTCCTCGCCGTAGCAGTCGCTGAGGCCCGGGCACGTGCTTGGGTC- 5948 Query 23317 CATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAG 23376 ||| || ||||| | ||| | | ||||| |||| || || || || ||||| || Sbjct 5947 CATCAGCGTCCACTTCCCCTCACTCTTCACGCGCTTCATGAACAGGTCGGGGATCCACAG 5888 Query 23377 AGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAA 23436 |||||||| || ||||| || ||| || || ||||||||||| |||| || Sbjct 5887 CGCGTAGAAGAGGTCGCGCGCACGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAG 5828 Query 23437 AAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTT 23496 ||| | || | ||| || ||||||||||||||||||| ||| || |||||| | ||| Sbjct 5827 GAAGCCGAAGATGTCGGCGTGCCACGGCTCGAGGTAAATGGCGAAGGCGCCCTTGCGCTT 5768 Query 23497 ATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAG 23556 | ||||||||| || ||||| ||||||||||||||| |||| | ||||||||||| || Sbjct 5767 ACCGCCGCCCTGGTCCACGTAGCGGGCCGTGTTGTTGAACACGCGCAGCATCGGCACCAG 5708 Query 23557 ACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAAC 23616 ||||| |||| |||| ||| || | || | || | |||||| || Sbjct 5707 GCCGTTCGACGTGCCGTTCGTGCCAGCGATGTAGCTGCCGGCGGAGCGGATGTTGTGCAC 5648 Query 23617 GTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTA 23676 ||| | || ||||| ||| ||| || || | ||||| | ||||| |||||||| Sbjct 5647 GTGCAGGCCGATGCCGCCGGCCGCCTTGCTGATGACGGCGCACTCCTTCAGCGTGTCGTA 5588 Query 23677 GATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTT 23736 || || || |||||||| || || | |||||| | ||| ||||| ||| |||| || Sbjct 5587 AATCCCGTCAATGCTGTCGTCCTTCGACGCGACGAGGAAGCACGAGCTCATCTGCGGCTT 5528 Query 23737 GGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAG 23796 || || |||| ||| || |||||| |||||||||| || | || |||||||| || Sbjct 5527 TGGTGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAAAAGCCCTTCGACATCAG 5468 Query 23797 ATTGTACGTGTC 23808 || |||||| || Sbjct 5467 ATCGTACGTCTC 5456 Score = 141 bits (156), Expect = 8e-29 Identities = 504/781 (65%), Gaps = 19/781 (2%) Strand=Plus/Minus Query 22109 TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTC 22168 ||||| || |||| || || | ||||||| || ||||| || || |||| |||||| Sbjct 7161 TCCACCGTGAACTTAATCGCATCGGCGGCCGCCTTCGTGCGCAGGTAGTACACACCCGTC 7102 Query 22169 TTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAAG 22228 ||||||||| || ||||| ||| || | |||||||| | | || | | || Sbjct 7101 TTCAGACCCGACTCCCACGTGTAGAAGAGCATCGACGTGATCTGGCCCGAGGTGGGGCTT 7042 Query 22229 TCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATA 22288 | || | | | || | |||||| ||| || || || || || ||| |||||| Sbjct 7041 TGCAGGAAGAGGTTCAGCGACTGGGACTGGTCAATGTACTGGCCGCGGTCGCGGGCCATG 6982 Query 22289 TTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAAC 22348 | |||| | ||| || || ||||| || || |||||| | | | | || | Sbjct 6981 TCGATCAGCTTGCGCTGCGGGATCTCCCACACCGTGCGGTACAGCTCCTTCAGGTCGTCC 6922 Query 22349 GGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTA 22408 || || ||||| || | ||||| ||||| | | |||||| || ||||| Sbjct 6921 GGGATGCTGTCGATGGTCAGCACGGAGCCGTTGTAGGAGATGATCTCGTTGCGCATCGTC 6862 Query 22409 TCGTTCCACAAACCGATGGCGGTCAAA----TCTTTGACCAGATGACGGTTCACCACTTG 22464 || ||||||| ||| || | || || | || || | ||||||||| | Sbjct 6861 TCATTCCACAGGCCG----CGCTTAATGAGGTCCATCACGAGGTACTTGTTCACCACCGG 6806 Query 22465 AAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTC 22524 ||||||||| || ||||| || || ||||| || ||||| || ||||| | || Sbjct 6805 GAACTCGCCGCTCAGCACGCGACGAACATAGATGTTCGAGGTGAAAGGCTCGAAGCACTC 6746 Query 22525 ATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTT 22584 ||||| || || || || | |||||| ||||| ||||||||||| | ||| || ||||| Sbjct 6745 GTTGTTGCCGAGGATTTGCGAGGTCGAGGCGGTGGGCATCGGCGCAAGCAGGAGAGAGTT 6686 Query 22585 TCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATC---GGA 22641 | || |||| || | || |||||| | ||| |||||| | | | Sbjct 6685 GCGCATGCCGACCTGCACCACCTTCTGCTTGAGGCTGTCCCAATCCCACCGGCCGCTGTT 6626 Query 22642 CGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTC 22701 ||| | || | |||||| ||| | |||| | ||| |||| ||||||||||| | Sbjct 6625 CGGGCGCGGGTTCTTCCACATGTCGAACTGCAGGATGCCCTGACTGGCCGGGCTGCCCTT 6566 Query 22702 GTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGC-TCGCCTCCAACGCGCCGT 22760 | | || ||||| || || | | || || || || | || ||||| || || Sbjct 6565 GAAGGTCTCGTAGGGGCCCTCCTCCTTCGCCAGCTC-CATCGACGACTCCACGGCAGCGA 6507 Query 22761 AATATATAGTCTCGAAGATTTTCTTGTTCAATTCG-GCGGCG--GCGACGCTTTCGTACG 22817 | || || || |||||||| | | ||||| || || ||| | ||| || | | Sbjct 6506 AGTAGATCGTTTCGAAGATCTCCGCGTTCA---CGCGCTGCGCCTCAGGGCTGGCGAAGG 6450 Query 22818 GCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGT 22877 ||| |||| || | ||| |||||||||| || || ||||| | |||| ||| |||| Sbjct 6449 GCAGGCGCAGCAGGATGAAGGCGTCCGCCAGGCCTTGCACGCCCAGGCCGACCGGGCGGT 6390 Query 22878 T 22878 | Sbjct 6389 T 6389 >seq8796 Length=7791 Score = 255 bits (282), Expect = 5e-63 Identities = 521/762 (68%), Gaps = 18/762 (2%) Strand=Plus/Plus Query 57678 TTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTG 57737 || || || |||||| ||||||| || |||| ||| || || || | ||||| || Sbjct 7027 TTCATCAAGCACGTGCTGGCGTTCTTTGCCGGCAGCGACGGCATCGTGATTGAGAACCTG 7086 Query 57738 GTCGAAAGATTTTCACAAG--AAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTC 57795 | || | | |||| || | ||| | ||| |||||||| | || ||||| || | Sbjct 7087 G-CGCA-GCGCTTCATGAGCGACGTGAAGGTGCCGGAGGCGCGCGCGTTCTACGGGTTCC 7144 Query 57796 AAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGA 57855 | || || || ||| | || || || | ||| ||| | || | || |||||| | | Sbjct 7145 AGCTGATGATGGAGAACATCCACTCGGAGACGTACTCGGTGCTGCTGGACACGTACATCA 7204 Query 57856 AGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCG-ATCGCC 57914 ||||| ||| ||||| | | ||| | |||||||| | || || |||| | ||| Sbjct 7205 CGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGAT-CCCGTGCATCCAG 7263 Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGG 57974 |||||||| |||||| | | ||||| |||| | || | ||| ||| || Sbjct 7264 AAGAAGGCGGAGTGGGCTGTGCGGTGGATCGGGAGCGGCGCGAGC---TTCCAGGAGCGG 7320 Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATT 58033 || |||| |||||| || || || || || ||||| ||||| || |||| | | || Sbjct 7321 CTGATCGGGTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGCG-CGCTGTT 7379 Query 58034 TTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCG 58093 ||| ||||||| ||||| |||||||| || |||||||| ||||||||| |||| ||||| Sbjct 7380 CTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCG 7439 Query 58094 CGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGT---ACTCTCACATTGTCAATAA 58150 ||||||||| || || || || || |||||||| ||| |||| ||||| | || Sbjct 7440 CGACGAGGGGCTGCACACGGACTTCGCGTGCCTGCTGTACAACTCGCACATCAAGCACAA 7499 Query 58151 ACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTT 58210 | | |||| || ||| | |||| || ||| || ||||| ||||| ||||| Sbjct 7500 GCTGCCGCGCGAGCGCGTGCTGGAGATCATCGTGGACGCGGTGAACATCGAGCGCGAGTT 7559 Query 58211 TGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTA 58270 || ||| || || |||||| || |||| |||||| || ||||||| |||| Sbjct 7560 CATCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAACGCGGAGCTGATGTCGCAGTA 7619 Query 58271 CATTGAGTTTGTTGCCGACAGACTTTTG--CTCGAACTGATTGGAGAGCGTCATTACAAC 58328 ||| ||||| ||||| ||| | || || ||| | |||||| || |||||| Sbjct 7620 CATCGAGTTCGTTGCGGACCGGCTGCTGGTGTCGCTGGGGCTGGAGA--AGCACTACAAC 7677 Query 58329 ACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTC 58388 || | || || || || ||| | |||||||||| |||||||||| ||||| ||| Sbjct 7678 GTGACGCAGCCCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTC 7737 Query 58389 GaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGC 58430 || || || ||| |||| || || || |||||||||||| Sbjct 7738 GAGAAGAAGGTTGGCGAGTACCAGAAGGCTGGCGTGATGAGC 7779 >seq6209 Length=3470 Score = 246 bits (272), Expect = 3e-60 Identities = 469/682 (69%), Gaps = 14/682 (2%) Strand=Plus/Plus Query 57756 GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTG 57815 || ||| | ||| |||||||| | || ||||| || || || || || ||| | Sbjct 3 GACGTGAAGGTGCCGGAGGCGCGCGCGTTCTACGGGTTCCAGCTGATGATGGAGAACATC 62 Query 57816 CATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGT 57875 || || || | ||| ||| | || | || |||||| | | ||||| ||| ||||| | Sbjct 63 CACTCGGAGACGTACTCGGTGCTGCTGGACACGTACATCACGGACAGCGAGGAGAAGCTG 122 Query 57876 AGACTGTTCAACGCGATCGAAACAATGCCCGCG-ATCGCCAAGAAGGCAGAGTGGTCAAT 57934 | ||| | |||||||| | || || |||| | ||| |||||||| |||||| | | Sbjct 123 CGGCTGCTGCACGCGATCCAGACGAT-CCCGTGCATCCAGAAGAAGGCGGAGTGGGCTGT 181 Query 57935 CAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGT 57994 ||||| |||| | || | ||| ||| |||| |||| |||||| || || Sbjct 182 GCGGTGGATCGGGAGCGGCGCGAGC---TTCCAGGAGCGGCTGATCGGGTTCGCGGCGGT 238 Query 57995 CGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCC 58053 || || || ||||| ||||| || |||| | | || ||| ||||||| ||||| | Sbjct 239 GGAGGGCATCTTCTTCTCGGGGTCGTTCTGCG-CGCTGTTCTGGCTGAAGAAGCGCGGGC 297 Query 58054 TGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTG 58113 ||||||| || |||||||| ||||||||| |||| |||||||||||||| || || || | Sbjct 298 TGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGGCTGCACACGG 357 Query 58114 ATTTTGCGTGCCTAATGT---ACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCT 58170 | || |||||||| ||| |||| ||||| | || | | |||| || ||| | Sbjct 358 ACTTCGCGTGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGC 417 Query 58171 TGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGG 58230 |||| || ||| || ||||| ||||| ||||| || ||| || || |||| Sbjct 418 TGGAGATCATCGTGGACGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGG 477 Query 58231 TGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACA 58290 || || |||| |||||| || ||||||| ||||||| ||||| ||||| ||| Sbjct 478 TGCGGCTGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTTGCGGACC 537 Query 58291 GACTTTTG--CTCGAACTGATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTT 58348 | || || ||| | |||||| || |||||| || | || || || || Sbjct 538 GGCTGCTGGTGTCGCTGGGGCTGGAGA--AGCACTACAACGTGACGCAGCCCTTCGACTT 595 Query 58349 TATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATA 58408 ||| | |||||||||| |||||||||| ||||| ||||| || || ||| |||| || Sbjct 596 CATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTTGGCGAGTA 655 Query 58409 TCAAAAATACGGCGTGATGAGC 58430 || || |||||||||||| Sbjct 656 CCAGAAGGCTGGCGTGATGAGC 677 >seq3668 Length=3103 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| || || |||||| || |||| || || || Sbjct 388 CATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACGATCGCCCTCGAGGTCGAGGCGAG 329 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | || || || || ||||||||| ||| | ||||| ||||| Sbjct 328 CGACACCATCGAGAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCA 269 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| || || ||||| ||||| ||| |||| || Sbjct 268 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGA 233 >seq6451 Length=1481 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| || || |||||| || |||| || || || Sbjct 218 CATGCAGATCTTTGTGAAGACCCTGACCGGTAAGACGATCGCCCTCGAGGTCGAGGCGAG 159 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | || || || || ||||||||| ||| | ||||| ||||| Sbjct 158 CGACACCATCGAGAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCA 99 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| || || || || ||||| ||| ||||||| Sbjct 98 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAAGA 63 >SEQ14990 Length=15354 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || ||||| ||||| ||||| ||||| || || | | || || || | Sbjct 8950 AATCATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATTGCGCTGGAGGTCGAGGC 9009 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| |||| | || || || || ||||||||| ||| | ||||| || Sbjct 9010 CAGCGACACGATCGAGAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCGGA 9069 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||| || || ||||||||||| ||| |||| || Sbjct 9070 CCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGA 9108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445682634921360