Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value SEQ14679 149 5e-31 SEQ11513 149 5e-31 SEQ10795 149 5e-31 SEQ10794 149 5e-31 >SEQ14679 Length=18604 Score = 149 bits (164), Expect = 5e-31 Identities = 307/452 (68%), Gaps = 10/452 (2%) Strand=Plus/Minus Query 20888 CGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTA 20947 ||| || | |||||| || | |||||| || ||| | ||| ||||||||| ||| Sbjct 16125 CGGGAAGGCACGCGGTACCCGCTCCAGCTGCTGCTTCAGCGCATCCACGTGGTTGCGGTA 16066 Query 20948 AACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGC 21007 ||||| |||||||| | ||||||||| | || ||||| ||| || || | | || Sbjct 16065 GACGTGCGCGTCACCGAGGGTGTGCACCAGCTCCCCCGGACGCAGCCCGGTCGCCTTTGC 16006 Query 21008 GATCA-GATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGT 21066 ||||| ||| |||||| || | ||| || ||||| ||||| |||||||| ||||||| Sbjct 16005 GATCAAGAT-CGTCAGCAGCGAGTACGACGCAATGTTGAACGGCACCCCGAGACCCATGT 15947 Query 21067 CGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC------ACGTAAAACT 21120 | || | |||||||||| |||||||| |||| | || ||||| |||| Sbjct 15946 CACACGAGCGCTGGTACAGCATGCAGGACAACTCCTTCGTGTCCGTGTTGACGTAGAACT 15887 Query 21121 GACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGC-GGGGTTCCACGCG 21179 | | | | ||| ||||||||||| ||||| | | || ||| ||||||||||| Sbjct 15886 GGCCGAGCAGGTGGCAAGGAGGGAGGGCCAT-CTTATGCAGTGCGCACGGGTTCCACGCC 15828 Query 21180 CACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAGC 21239 | | | || ||||||| || | || | || || | | | Sbjct 15827 GTGAAGAGCAGCCGGCGATCGTTCGGGTTTGTCTTGAGGGTCTCGACAATTTGCTTGATT 15768 Query 21240 TGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGT 21299 |||||||| |||| || |||||||||||||| ||| |||||||||| || || || Sbjct 15767 TGGTCCACGCCCTCGCCGTCGTAGTTGGCGTCAAAGCCCTTGTACTCCGCACCGAAGTGA 15708 Query 21300 CTCCACTGGAACCCGTACACCGGCCCCAGATC 21331 | ||||||||| ||||| || || || || || Sbjct 15707 CGCCACTGGAAACCGTAGACAGGGCCGAGGTC 15676 >SEQ11513 Length=10065 Score = 149 bits (164), Expect = 5e-31 Identities = 307/452 (68%), Gaps = 10/452 (2%) Strand=Plus/Plus Query 20888 CGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTA 20947 ||| || | |||||| || | |||||| || ||| | ||| ||||||||| ||| Sbjct 8426 CGGGAAGGCACGCGGTACCCGCTCCAGCTGCTGCTTCAGCGCATCCACGTGGTTGCGGTA 8485 Query 20948 AACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGC 21007 ||||| |||||||| | ||||||||| | || ||||| ||| || || | | || Sbjct 8486 GACGTGCGCGTCACCGAGGGTGTGCACCAGCTCCCCCGGACGCAGCCCGGTCGCCTTTGC 8545 Query 21008 GATCA-GATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGT 21066 ||||| ||| |||||| || | ||| || ||||| ||||| |||||||| ||||||| Sbjct 8546 GATCAAGAT-CGTCAGCAGCGAGTACGACGCAATGTTGAACGGCACCCCGAGACCCATGT 8604 Query 21067 CGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC------ACGTAAAACT 21120 | || | |||||||||| |||||||| |||| | || ||||| |||| Sbjct 8605 CACACGAGCGCTGGTACAGCATGCAGGACAACTCCTTCGTGTCCGTGTTGACGTAGAACT 8664 Query 21121 GACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGC-GGGGTTCCACGCG 21179 | | | | ||| ||||||||||| ||||| | | || ||| ||||||||||| Sbjct 8665 GGCCGAGCAGGTGGCAAGGAGGGAGGGCCAT-CTTATGCAGTGCGCACGGGTTCCACGCC 8723 Query 21180 CACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAGC 21239 | | | || ||||||| || | || | || || | | | Sbjct 8724 GTGAAGAGCAGCCGGCGATCGTTCGGGTTTGTCTTGAGGGTCTCGACAATTTGCTTGATT 8783 Query 21240 TGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGT 21299 |||||||| |||| || |||||||||||||| ||| |||||||||| || || || Sbjct 8784 TGGTCCACGCCCTCGCCGTCGTAGTTGGCGTCAAAGCCCTTGTACTCCGCACCGAAGTGA 8843 Query 21300 CTCCACTGGAACCCGTACACCGGCCCCAGATC 21331 | ||||||||| ||||| || || || || || Sbjct 8844 CGCCACTGGAAACCGTAGACAGGGCCGAGGTC 8875 >SEQ10795 Length=18609 Score = 149 bits (164), Expect = 5e-31 Identities = 307/452 (68%), Gaps = 10/452 (2%) Strand=Plus/Plus Query 20888 CGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTA 20947 ||| || | |||||| || | |||||| || ||| | ||| ||||||||| ||| Sbjct 2480 CGGGAAGGCACGCGGTACCCGCTCCAGCTGCTGCTTCAGCGCATCCACGTGGTTGCGGTA 2539 Query 20948 AACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGC 21007 ||||| |||||||| | ||||||||| | || ||||| ||| || || | | || Sbjct 2540 GACGTGCGCGTCACCGAGGGTGTGCACCAGCTCCCCCGGACGCAGCCCGGTCGCCTTTGC 2599 Query 21008 GATCA-GATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGT 21066 ||||| ||| |||||| || | ||| || ||||| ||||| |||||||| ||||||| Sbjct 2600 GATCAAGAT-CGTCAGCAGCGAGTACGACGCAATGTTGAACGGCACCCCGAGACCCATGT 2658 Query 21067 CGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC------ACGTAAAACT 21120 | || | |||||||||| |||||||| |||| | || ||||| |||| Sbjct 2659 CACACGAGCGCTGGTACAGCATGCAGGACAACTCCTTCGTGTCCGTGTTGACGTAGAACT 2718 Query 21121 GACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGC-GGGGTTCCACGCG 21179 | | | | ||| ||||||||||| ||||| | | || ||| ||||||||||| Sbjct 2719 GGCCGAGCAGGTGGCAAGGAGGGAGGGCCAT-CTTATGCAGTGCGCACGGGTTCCACGCC 2777 Query 21180 CACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAGC 21239 | | | || ||||||| || | || | || || | | | Sbjct 2778 GTGAAGAGCAGCCGGCGATCGTTCGGGTTTGTCTTGAGGGTCTCGACAATTTGCTTGATT 2837 Query 21240 TGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGT 21299 |||||||| |||| || |||||||||||||| ||| |||||||||| || || || Sbjct 2838 TGGTCCACGCCCTCGCCGTCGTAGTTGGCGTCAAAGCCCTTGTACTCCGCACCGAAGTGA 2897 Query 21300 CTCCACTGGAACCCGTACACCGGCCCCAGATC 21331 | ||||||||| ||||| || || || || || Sbjct 2898 CGCCACTGGAAACCGTAGACAGGGCCGAGGTC 2929 >SEQ10794 Length=10062 Score = 149 bits (164), Expect = 5e-31 Identities = 307/452 (68%), Gaps = 10/452 (2%) Strand=Plus/Minus Query 20888 CGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTA 20947 ||| || | |||||| || | |||||| || ||| | ||| ||||||||| ||| Sbjct 1640 CGGGAAGGCACGCGGTACCCGCTCCAGCTGCTGCTTCAGCGCATCCACGTGGTTGCGGTA 1581 Query 20948 AACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGC 21007 ||||| |||||||| | ||||||||| | || ||||| ||| || || | | || Sbjct 1580 GACGTGCGCGTCACCGAGGGTGTGCACCAGCTCCCCCGGACGCAGCCCGGTCGCCTTTGC 1521 Query 21008 GATCA-GATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGT 21066 ||||| ||| |||||| || | ||| || ||||| ||||| |||||||| ||||||| Sbjct 1520 GATCAAGAT-CGTCAGCAGCGAGTACGACGCAATGTTGAACGGCACCCCGAGACCCATGT 1462 Query 21067 CGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC------ACGTAAAACT 21120 | || | |||||||||| |||||||| |||| | || ||||| |||| Sbjct 1461 CACACGAGCGCTGGTACAGCATGCAGGACAACTCCTTCGTGTCCGTGTTGACGTAGAACT 1402 Query 21121 GACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGC-GGGGTTCCACGCG 21179 | | | | ||| ||||||||||| ||||| | | || ||| ||||||||||| Sbjct 1401 GGCCGAGCAGGTGGCAAGGAGGGAGGGCCAT-CTTATGCAGTGCGCACGGGTTCCACGCC 1343 Query 21180 CACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAGC 21239 | | | || ||||||| || | || | || || | | | Sbjct 1342 GTGAAGAGCAGCCGGCGATCGTTCGGGTTTGTCTTGAGGGTCTCGACAATTTGCTTGATT 1283 Query 21240 TGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGT 21299 |||||||| |||| || |||||||||||||| ||| |||||||||| || || || Sbjct 1282 TGGTCCACGCCCTCGCCGTCGTAGTTGGCGTCAAAGCCCTTGTACTCCGCACCGAAGTGA 1223 Query 21300 CTCCACTGGAACCCGTACACCGGCCCCAGATC 21331 | ||||||||| ||||| || || || || || Sbjct 1222 CGCCACTGGAAACCGTAGACAGGGCCGAGGTC 1191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427697625153840