Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq9113 100 3e-16 seq8796 95.1 1e-14 seq6209 95.1 1e-14 SEQ14990 86.0 6e-12 >seq9113 Length=16536 Score = 100 bits (110), Expect = 3e-16 Identities = 284/433 (66%), Gaps = 5/433 (1%) Strand=Plus/Minus Query 153957 ACGCGACGCATAAATATATCGGGAACCCATAGGGCGTTCATCAGGTCGCGCGCTTTCGTG 154016 ||||| ||| || | ||||| | ||| || |||| | ||||||||||| | | Sbjct 5919 ACGCGCTTCATGAACAGGTCGGGGATCCACAGCGCGTAGAAGAGGTCGCGCGCACGCTGG 5860 Query 154017 TCTTCGCTGCCAATGTTTCGACGCATGTGTAAGACGTCCATTATGTCGCAATGCCACGGT 154076 || || |||| |||| || || | | || | | | |||||| |||||||| Sbjct 5859 TCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAGGAAGCCGAAGATGTCGGCGTGCCACGGC 5800 Query 154077 TCCACGTAAACTGCTTGAGCGCCTTTACGCTT---GCCGCCCTGATTTACGTGACGCACC 154133 || | ||||| || ||||| || ||||| ||||||||| | |||| || || Sbjct 5799 TCGAGGTAAATGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCC 5740 Query 154134 ATATTGTTGAAAACCCGAAGCATGGGTAGCAGACCGCTGGCGGTACCGTTTGTAGATTTA 154193 | |||||||| || || ||||| || | ||| ||| | | || ||||| || Sbjct 5739 GTGTTGTTGAACACGCGCAGCATCGGCACCAGGCCGTTCGACGTGCCGTTCGTGCCAGCG 5680 Query 154194 ATCTTGCTGTTGCGGCCTCGAACGCTGTTTACGTTTAATCCAATACCGCCGCCGTGTTTG 154253 || | |||| | | || | | ||| |||| | || || |||||| | ||| Sbjct 5679 ATGTAGCTGCCGGCGGAGCGGATGTTGTGCACGTGCAGGCCGATGCCGCCGGCCGCCTTG 5620 Query 154254 GAGATCATGGCGCAATCGTTCAATGTGTTATAGATACCACGAATGCTATCG-CTTTCCAT 154312 ||| | |||||| || |||| |||| || || || |||||| ||| | ||| | Sbjct 5619 CTGATGACGGCGCACTCCTTCAGCGTGTCGTAAATCCCGTCAATGCTGTCGTCCTTCGAC 5560 Query 154313 GGTCAATAGGAAACATGAACTCATCTGCGGAGTTGGAGTGCCGGCAGCAAACATGGTCGG 154372 | | ||||| || || ||||||||||| |||| |||||||| || | |||||| Sbjct 5559 GCG-ACGAGGAAGCACGAGCTCATCTGCGGCTTTGGTGTGCCGGCGTTGAAGAGGGTCGG 5501 Query 154373 GCTTGCGTGCGTG 154385 | | ||||||||| Sbjct 5500 GGTGGCGTGCGTG 5488 >seq8796 Length=7791 Score = 95.1 bits (104), Expect = 1e-14 Identities = 241/361 (67%), Gaps = 8/361 (2%) Strand=Plus/Plus Query 52705 ATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGAT 52764 ||||| || || ||||| ||||||||| |||| ||||||||||| || ||||||| || Sbjct 7402 ATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGGCTGCACACGGAC 7461 Query 52765 TTTGCGTGTTTGTATTATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCTA 52824 || ||||| || || || ||| | | || | || || | || | || Sbjct 7462 TTCGCGTGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTG 7521 Query 52825 GACATGTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTA 52884 || || | || || || |||| || ||||| | ||||| | || || Sbjct 7522 GAGATCATCGTGGACGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTG 7581 Query 52885 TCATTGTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGA 52944 || | |||||||||||| |||||| ||||||||||||| ||||||||| | Sbjct 7582 CGGCTGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTTGCGGACCGG 7641 Query 52945 CTGTTGATGCAGCTCGGTCAGCCGAAATACTATAATGCG-CGTAACCCCTTTTCG--TTT 53001 ||| || || ||| || | | ||| |||| || | | || | ||| |||| || Sbjct 7642 CTGCTGGTGTCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCC---TTCGACTTC 7698 Query 53002 ATGAACAACATATCGCTCGAGGGCAAAACAAACTTTTTCGAG-AGACGTGTGGGCGAGTA 53060 ||| | | || ||||| ||||||| || ||||| |||||| ||| | || |||||||| Sbjct 7699 ATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAG-GTTGGCGAGTA 7757 Query 53061 C 53061 | Sbjct 7758 C 7758 >seq6209 Length=3470 Score = 95.1 bits (104), Expect = 1e-14 Identities = 241/361 (67%), Gaps = 8/361 (2%) Strand=Plus/Plus Query 52705 ATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGAT 52764 ||||| || || ||||| ||||||||| |||| ||||||||||| || ||||||| || Sbjct 300 ATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGGCTGCACACGGAC 359 Query 52765 TTTGCGTGTTTGTATTATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCTA 52824 || ||||| || || || ||| | | || | || || | || | || Sbjct 360 TTCGCGTGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTG 419 Query 52825 GACATGTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTA 52884 || || | || || || |||| || ||||| | ||||| | || || Sbjct 420 GAGATCATCGTGGACGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTG 479 Query 52885 TCATTGTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGA 52944 || | |||||||||||| |||||| ||||||||||||| ||||||||| | Sbjct 480 CGGCTGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTTGCGGACCGG 539 Query 52945 CTGTTGATGCAGCTCGGTCAGCCGAAATACTATAATGCG-CGTAACCCCTTTTCG--TTT 53001 ||| || || ||| || | | ||| |||| || | | || | ||| |||| || Sbjct 540 CTGCTGGTGTCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCC---TTCGACTTC 596 Query 53002 ATGAACAACATATCGCTCGAGGGCAAAACAAACTTTTTCGAG-AGACGTGTGGGCGAGTA 53060 ||| | | || ||||| ||||||| || ||||| |||||| ||| | || |||||||| Sbjct 597 ATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAG-GTTGGCGAGTA 655 Query 53061 C 53061 | Sbjct 656 C 656 >SEQ14990 Length=15354 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | |||| || | ||| | ||| ||||| || || ||||| || || Sbjct 9183 TGGCCACCGCGCAGGCGCAGCACNAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCC 9124 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | |||| || || ||||| || ||||| ||||||| || ||||| || || Sbjct 9123 GCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGC 9064 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTC 139713 || ||||| || ||||| ||| | || | || | | || | |||||| ||| ||| Sbjct 9063 GGGATGCCCTCCTTGTCC-TGAATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTC 9005 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | | | ||||||||||||| ||| || ||||| || ||||| Sbjct 9004 GACCTCCAGCGCAATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 8954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495970783373600