Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq8796 145 1e-29 seq6209 129 9e-25 seq9113 109 8e-19 >seq8796 Length=7791 Score = 145 bits (160), Expect = 1e-29 Identities = 540/835 (65%), Gaps = 50/835 (6%) Strand=Plus/Plus Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 |||||| | || ||| |||| || ||| ||| || | || ||||||| | ||| Sbjct 6955 TGGACGCTGGAGGAGATCGACCTCGGCAACGACATGAAGGACTGGGAGAGGC---TGAAC 7011 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || ||||| | || || |||| | |||| |||||||||||| ||| || ||| Sbjct 7012 GACGGGGAGCGGCACTTCATCAAGCACGTGCTGGCGTTCTTTGCCGGCAGCGACGGCATC 7071 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC 125234 || | || || ||| | || ||| || ||| | || |||| | || || Sbjct 7072 GTGATTGAGAACCTGGCGCAGCGCTTCATGAGCGACGTGAAGGTGCCGGAGGCG-CGCGC 7130 Query 125235 TTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 || ||||| ||||| | ||||| |||||| | |||||||| | |||||| ||| | Sbjct 7131 GTTCTACGGGTTCCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCGGTGCTGCT 7190 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAA-CACATGCTCTTTAACGCAATCGACACGG 125352 |||| |||||| | || | || | | || | ||| | |||| ||| | ||| Sbjct 7191 GGACACGTACAT-CACGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGA 7249 Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT-CT 125411 | |||| || | || ||||| | |||| | |||||||||| || | | || Sbjct 7250 TCCCGTGCATCCAGAAGAAGGCGGAGTGGGCTGTGCGGTGGATCGGGAGCGGCGCGAGCT 7309 Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAG 125470 || || | ||| | | ||||| || || |||||||||||||| ||||| | | Sbjct 7310 TCCAG----GAGCGGCTGATCGGGTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCG 7365 Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530 || |||| | | || ||||| ||||||||||| || ||||| || |||||| ||| || Sbjct 7366 TTCTGCGCGC-TGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAA 7424 Query 125531 CGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT----TTC 125586 |||| | || || || |||||||| || ||| ||||| || || |||| || Sbjct 7425 CGAGCTGATCTCGCGCGACGAGGGGCTGCACACGGACTTCGCGTGCCTGCTGTACAACTC 7484 Query 125587 GCA--------ACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACAT 125638 ||| || | |||| | |||| || | | || || ||||| Sbjct 7485 GCACATCAAGCACAAGCTGCCGCGCGAGCGC-------GTGCTG--GAGATCATC----- 7530 Query 125639 TGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCAT 125698 || || || |||| || || | ||||| | ||| | || ||||| | | Sbjct 7531 -GT---GGACGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGCGGCT 7586 Query 125699 GATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACT 125758 ||| ||||||||| |||| |||| ||||||| ||||| || || || || || || Sbjct 7587 GATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTTGCGGACCGGCTGCT 7646 Query 125759 GTACGAGTTGATTGGCC---GCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGAC 125815 | | || | | || | ||| ||||||| | | | ||||| || |||||| Sbjct 7647 G---GTGTCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCCTTCGACTTCATGGA 7703 Query 125816 CAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | || || || |||| ||||| ||||| |||||||||||||| |||||||| Sbjct 7704 GATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTTGGCGAGTAC 7758 >seq6209 Length=3470 Score = 129 bits (142), Expect = 9e-25 Identities = 426/654 (65%), Gaps = 45/654 (7%) Strand=Plus/Plus Query 125235 TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATT 125294 || ||||| ||||| | ||||| |||||| | |||||||| | |||||| ||| | Sbjct 30 TTCTACGGGTTCCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCGGTGCTGCTG 89 Query 125295 GACATGTACATTCGCGATCCGCAACGTAAA-CACATGCTCTTTAACGCAATCGACACGGT 125353 |||| |||||| | || | || | | || | ||| | |||| ||| | ||| | Sbjct 90 GACACGTACAT-CACGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGAT 148 Query 125354 GCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT-CTT 125412 |||| || | || ||||| | |||| | |||||||||| || | | ||| Sbjct 149 CCCGTGCATCCAGAAGAAGGCGGAGTGGGCTGTGCGGTGGATCGGGAGCGGCGCGAGCTT 208 Query 125413 CGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGT 125471 | || | ||| | | ||||| || || |||||||||||||| ||||| | || Sbjct 209 CCAG----GAGCGGCTGATCGGGTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGT 264 Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAAC 125531 | |||| | | || ||||| ||||||||||| || ||||| || |||||| ||| ||| Sbjct 265 TCTGCGCGC-TGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAAC 323 Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT----TTCG 125587 ||| | || || || |||||||| || ||| ||||| || || |||| ||| Sbjct 324 GAGCTGATCTCGCGCGACGAGGGGCTGCACACGGACTTCGCGTGCCTGCTGTACAACTCG 383 Query 125588 CA--------ACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATT 125639 || || | |||| | |||| || | | || || ||||| Sbjct 384 CACATCAAGCACAAGCTGCCGCGCGAGCGC-------GTGCTG--GAGATCATC------ 428 Query 125640 GTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATG 125699 || || || |||| || || | ||||| | ||| | || ||||| | || Sbjct 429 GT---GGACGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGCGGCTG 485 Query 125700 ATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTG 125759 || ||||||||| |||| |||| ||||||| ||||| || || || || || ||| Sbjct 486 ATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTTGCGGACCGGCTGCTG 545 Query 125760 TACGAGTTGATTGGCC---GCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACC 125816 | || | | || | ||| ||||||| | | | ||||| || |||||| Sbjct 546 ---GTGTCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCCTTCGACTTCATGGAG 602 Query 125817 AGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | || || || |||| ||||| ||||| |||||||||||||| |||||||| Sbjct 603 ATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTTGGCGAGTAC 656 >seq9113 Length=16536 Score = 109 bits (120), Expect = 8e-19 Identities = 355/545 (65%), Gaps = 10/545 (2%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||||| | | ||||| ||||| ||||| | ||| ||| | | | || Sbjct 5687 ACGAACGGCACGTCGAACGGCCTGGTGCCGATGCTGCGCGTGTTCAACAACACGGCCCGC 5746 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| ||||||||| ||| || ||||| | ||| | ||| | || || ||| Sbjct 5747 TACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCATTTACCTCGAGCCGTGG 5806 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATG---CGCAAAAACTCTGGCTTTGAAGAGGCA 96983 ||||| ||| | || | ||| | | || ||||| | | ||| || || Sbjct 5807 CACGCCGACATCTTCGGCTTCCTGCTGCTGAAGCGCAACACC---GGCAAGGACGACCAG 5863 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 || || | ||| | || || || || ||| | || || |||||||||||||||| || Sbjct 5864 CGTGCGCGCGACCTCTTCTACGCGCTGTGGATCCCCGACCTGTTCATGAAGCGCGTGAAG 5923 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 | || | |||| || ||| ||| | ||| || || || ||| |||| Sbjct 5924 AGTGAGGGGAAGTGGACGCTGATGGACCCAAGCACGTGCCCGGGCCTCAGCGACTGCTAC 5983 Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTG-AGACG 97162 ||||| ||||| ||| | ||| | ||||||| |||||||| ||| ||||| Sbjct 5984 GGCGAGGAGTTCGAGCGCCTGTATGAGCGCTACGAGGCGGAGGGCCGCGGAGTGCAGACG 6043 Query 97163 AGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCC 97222 | || | |||| || ||||| || || | | | ||| | ||||| || || Sbjct 6044 A-TCCAGGCACAGGAGGTGTGGTTTGCGATTCTCGAGTCGCAGATCGAGACCGGCGTCCC 6102 Query 97223 GTACATTCTCTACAAGGATACCGTGAATC-GCAACAGCAACCAACGCCACTTGGGCACCA 97281 || ||| ||||||||||| | ||| | | |||| ||||| || | ||||||| Sbjct 6103 GTTCATCCTCTACAAGGACGC-GTGCAACAGCAAGTCGAACCAGAAGAACCTCGGCACCA 6161 Query 97282 TCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAG 97341 ||||| |||| || || ||||| || ||||| |||||| | || ||||| ||||| || | Sbjct 6162 TCAAGTGCTCGAACCTCTGCACCGAGATTGTGGAGTACACGTCGCCGGAGGAGACCGCGG 6221 Query 97342 TTTGC 97346 | ||| Sbjct 6222 TGTGC 6226 Score = 84.2 bits (92), Expect = 3e-11 Identities = 217/323 (67%), Gaps = 6/323 (2%) Strand=Plus/Plus Query 97950 CTGTGGAACGATGAC-ATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACAT 98008 |||||||| || ||| ||| | | |||||| | | |||| || ||| | | | ||| Sbjct 6851 CTGTGGAATGA-GACGATGCGCAACGAGATCATCTCCTACAACGGCTCCGTGCTGACCAT 6909 Query 98009 TACCATCATCCCGGAAGAGTTGC-GCAGAATCTACAAGACTGTCTGGGAGATTCCGACCA 98067 || ||||||||| || || | || | ||| || || |||||||| ||| Sbjct 6910 CGACAGCATCCCGGACGACCTGAAGGAGC-TGTACCGCACGGTGTGGGAGATCCCGCAGC 6968 Query 98068 AGACGCTGATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCA 98127 | ||||||||| ||||| |||| | || |||||||||||| || ||| | | Sbjct 6969 GCAAGCTGATCGACATGGCCCGCGACCGCGGCCAGTACATTGACCAGTCCCAGTCGCTGA 7028 Query 98128 ATCTGTACGTTGCCGAG-CCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGG 98186 | || | | ||| || ||||||| | | || || ||||| | ||| ||| | ||| Sbjct 7029 ACCTCTTC-CTGCAAAGCCCCACCTCGGGCCAGATCACGTCGATGCTCTTCTACACGTGG 7087 Query 98187 AACAAGGGCCTCAAGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATA 98246 | ||| || |||||||| ||||||| ||| | || ||| ||||| || |||| || Sbjct 7088 GAGTCGGGTCTGAAGACGGGTGTGTACTACCTGCGCACGAAGGCGGCCGCCGATGCGATT 7147 Query 98247 CCATTTACGGTGGACGTGAATCG 98269 || |||||||| | ||| || Sbjct 7148 AAGTTCACGGTGGATGCGAAGCG 7170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740919945713080