Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value SEQ14990 86.0 6e-12 SEQ12445 82.4 7e-11 seq7724 82.4 7e-11 seq6451 82.4 7e-11 seq4357 82.4 7e-11 >SEQ14990 Length=15354 Score = 86.0 bits (94), Expect = 6e-12 Identities = 154/222 (69%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||| | ||||| || || ||||| || | ||| || || | ||| | Sbjct 9168 CGCAGCACNAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 9109 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || || | ||||| | | ||||| || || || || || || ||| Sbjct 9108 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 9049 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGA 94970 || | ||| || ||||| ||| ||| ||||| || ||| ||||| || | || | Sbjct 9048 TCCTGAATCTTCGCCTTCACGTTCTCGATCGTGTC-GC-TGGCCTCGACCTCCAGCGCAA 8991 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTA 95012 |||| || || || || || ||||| |||||||||||| ||| Sbjct 8990 TGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGATTA 8949 >SEQ12445 Length=2763 Score = 82.4 bits (90), Expect = 7e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 115617 GGTGAGGATCGAACTCACAACCTTGGCATTATAAGTACCACGCGCTGCCGATTGCGCTAC 115676 |||||||||||||||||| ||||||| ||||| || |||||||||||||| |||||||| Sbjct 1909 GGTGAGGATCGAACTCACGACCTTGGGATTATGAGACCCACGCGCTGCCGACTGCGCTAC 1968 >seq7724 Length=4952 Score = 82.4 bits (90), Expect = 7e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 115617 GGTGAGGATCGAACTCACAACCTTGGCATTATAAGTACCACGCGCTGCCGATTGCGCTAC 115676 |||||||||||||||||| ||||||| ||||| || |||||||||||||| |||||||| Sbjct 190 GGTGAGGATCGAACTCACGACCTTGGGATTATGAGACCCACGCGCTGCCGACTGCGCTAC 131 >seq6451 Length=1481 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||| | ||||| || || ||||| || | ||| || || | ||| | Sbjct 3 CGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 62 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || ||| ||||||| | | ||||| || || || || || || ||| Sbjct 63 TCTTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 122 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGAT 94971 || | ||| || ||||| ||| ||| ||||| || | ||||| || | | ||| Sbjct 123 TCCTGAATCTTCGCCTTCACGTTCTCGATGGTGTC-GCTCGCCTCGACCTCGAGGGCGAT 181 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || || || |||||||||||||||||| Sbjct 182 CGTCTTACCGGTCAGGGTCTTCACAAAGATCTGCATG 218 >seq4357 Length=786 Score = 82.4 bits (90), Expect = 7e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 115617 GGTGAGGATCGAACTCACAACCTTGGCATTATAAGTACCACGCGCTGCCGATTGCGCTAC 115676 |||||||||||||||||| ||||||| ||||| || |||||||||||||| |||||||| Sbjct 187 GGTGAGGATCGAACTCACGACCTTGGGATTATGAGACCCACGCGCTGCCGACTGCGCTAC 128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448206960479880