Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq9113 170 5e-37 >seq9113 Length=16536 Score = 170 bits (188), Expect = 5e-37 Identities = 584/892 (65%), Gaps = 44/892 (5%) Strand=Plus/Plus Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 ||||| |||||||||||||| | || |||| ||||| | || ||||| | || Sbjct 5381 ATTGTGGAACGCCCGCAGCAGCTCTTCCTGCGCGTTGCCCTCGGCATCCACGTCGGCGAC 5440 Query 363502 GTTGATGCCGCGATTGAAACATATAAGCT----TCTAAGTGCTCGTGTATTCACGCACGC 363557 | | || | ||| || || | || || ||| ||| | ||||||||||| Sbjct 5441 CTCAAGAACGTGCGTGAGACGTACGATCTGATGTCGAAGGGCT----TTTTCACGCACGC 5496 Query 363558 CACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCT 363617 ||| || || | | ||| || || || | || || |||||| || ||||| || | Sbjct 5497 CACCCCGACCCTCTTCAACGCCGGCACACCAAAGCCGCAGATGAGCTCGTGCTTCCTCGT 5556 Query 363618 AAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTAT 363677 ||||||||| ||| || || || | ||||| || ||| | || || | || Sbjct 5557 CGCGTCGAAGGACGACAGCATTGACGGGATTTACGACACGCTGAAGGAGTGCGCCGTCAT 5616 Query 363678 TTCCAAGAATGCAGGCGGAATTGG--TGTATCGATCCACAATGTTCG-TGCACAGAACAG 363734 |||| || ||||| || || || | || | ||||| | || | | | | ||| Sbjct 5617 CAGCAAGGCGGCCGGCGGCATCGGCCTGCA-CG-TGCACAACATCCGCTCCGCCGG-CAG 5673 Query 363735 TTACATTCGC-GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTG 363793 ||||| ||| ||||| || ||||| || ||||| || ||||| || ||||| Sbjct 5674 CTACAT-CGCTGGCACGAACGGCACGTCGAACGGCCTGGTGCCGATGCTGCGCGTGTTCA 5732 Query 363794 ACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGT 363853 |||| || || | ||||| |||||||| || || |||||||| || || || || || | Sbjct 5733 ACAACACGGCCCGCTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCATTT 5792 Query 363854 ATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA---AACACGG 363910 | |||||||| || ||||| || || | || || ||| | ||| ||||| | Sbjct 5793 ACCTCGAGCCGTGGCACGCCGACATCTTCGGCTTCCT---GCTGCTGAAGCGCAACACCG 5849 Query 363911 GAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTA 363970 | || || || |||||| || || || ||||| || || ||| | | |||| || | Sbjct 5850 GCAAGGACGACCAGCGTGCGCGCGACCTCTTCTACGCGCTGTGGATCCCCGACCTGTTCA 5909 Query 363971 TGAAGCGCGTG--GAGGCAGGTAAGAATTGGTCACTCTTTTGCCCA--CACGAATGTCCA 364026 ||||||||||| ||| ||| ||| ||| | || | |||| |||| || || Sbjct 5910 TGAAGCGCGTGAAGAGTGAGG--GGAAGTGGACGCTGATGGACCCAAGCACG--TGCCCG 5965 Query 364027 GGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAG 364086 || || ||| | || || || | | || || || || || ||||| Sbjct 5966 GGCCTCAGCGACTGCTACGGCGAGGAGTTCGAGCGCCTGTATGAGCGCTACGAGGCGGAG 6025 Query 364087 GGAAAGGCTCGTA----AGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTC 364142 | | | || | |||| || | |||||| || | |||||||| || | || || Sbjct 6026 G----GCCGCGGAGTGCAGACGATCCAGGCACAGGAGGTGTGGTTTGCGATTCTCGAGTC 6081 Query 364143 GCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAA 364202 |||||| ||||| || || | || | ||||| || |||||||| ||||||| || Sbjct 6082 GCAGATCGAGACCGGCGTCCCGTTCATCCTCTACAAGGACGCGTGCAACAGCAAGTCGAA 6141 Query 364203 CCAGCAGCACCTTGGTACAATTCAGCAGAGC---AACCTATGTACCGAGATTATTGAATA 364259 |||| || |||| || || | ||| || || ||||| || ||||||||| | || || Sbjct 6142 CCAGAAGAACCTCGGCACCA-TCA--AGTGCTCGAACCTCTGCACCGAGATTGTGGAGTA 6198 Query 364260 CACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCG 364311 ||| | || || ||||| || || || ||||| || || ||||| || ||| Sbjct 6199 CACGTCGCCGGAGGAGACCGCGGTGTGCAACCTCGCCTCCATCGCCCTGCCG 6250 Score = 116 bits (128), Expect = 1e-20 Identities = 289/433 (67%), Gaps = 12/433 (3%) Strand=Plus/Plus Query 364732 CGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAAC 364791 |||||||| ||| | ||||| |||||||| || || || | || |||||||| ||| Sbjct 6683 CGCAACTCTCTCCTGCTTGCGCCGATGCCCACCGCCTCGACCTCGCAAATCCTCGGCAAC 6742 Query 364792 AACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAA 364851 |||||||||||||| || || || || | ||| || || || || ||| || Sbjct 6743 AACGAGTGCTTCGAGCCTTTCACCTCGAACATCTATGTTCGTCGCGTGCTGAGCGGCGAG 6802 Query 364852 TTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGAC 364911 || ||||| || || |||||||| || | ||| || | ||||| |||||| ||| Sbjct 6803 TTCCCGGTGGTGAACAAGTACCTCGTGATGGACCTCATTAAGCGCGGCCTGTGGAATGAG 6862 Query 364912 AGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACAT-TCCAGGATTTCC 364970 | ||| ||| | |||||| || || || || |||| || ||| ||| | | || Sbjct 6863 ACGATGCGCAACGAGATCATCTCCTACAACGGCTCCGTGCTGACCATCGACAGCA-TCCC 6921 Query 364971 AGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGA 365030 || || |||||| | ||| || || ||||| || | ||| | || || || Sbjct 6922 GGACGACCTGAAGGAGCTGTACCGCACGGTGTGGGAGATCCCGCAGCGCAAGCTGATCGA 6981 Query 365031 TATGGCGGCCGATCGCG----GTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCA 365086 ||||| ||| |||| || | || | | ||| ||||||| | ||| | ||| Sbjct 6982 CATGGCCCGCGACCGCGGCCAGTACATTGACCAGTC----CCAGTCGCTGAACCTCTTCC 7037 Query 365087 TGACTCAG-CCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGT 365145 || | || || ||||| | | || | || || |||| |||||| |||| | || ||| Sbjct 7038 TG-CAAAGCCCCACCTCGGGCCAGATCACGTCGATGCTCTTCTACACGTGGGAGTCGGGT 7096 Query 365146 CTTAAGACAGGTG 365158 || ||||| |||| Sbjct 7097 CTGAAGACGGGTG 7109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303102560655806