Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq3792 98.7 1e-15 SEQ11735 82.4 9e-11 SEQ11734 82.4 9e-11 >seq3792 Length=12403 Score = 98.7 bits (108), Expect = 1e-15 Identities = 168/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 15362 TATTCGGGCTTTACCGGCGAAAGGATCCAAAGCACCATATTTATGGGACCGACGTACTAT 15421 || || ||| | |||||||| ||| || || | | || | || || | ||||| Sbjct 1258 TACTCCGGCATCACCGGCGAGCTGATGCAGGGCTACGTCTTCTTTGGCCCCATCTACTAC 1199 Query 15422 CACCGACTCAAACACATGGTAAAGGACAAGATGCACGCGCGATCGCACGGACAGGTGACG 15481 || || || || |||||||| | ||||||||||||||||||||| ||| | | || Sbjct 1198 CAGCGTCTGAAGCACATGGTGACGGACAAGATGCACGCGCGATCTACCGGGCCACGGTCG 1139 Query 15482 ACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAAGGCGGTGGCCTCCGCTTTGGAGAG 15541 | ||| || ||||||| | || || |||| |||||||||| ||| |||| ||| Sbjct 1138 ATGCTGACGCGGCAGCCCACCGAGGGCCGCTCGCGCAGCGGTGGCCTTCGCGTTGGTGAG 1079 Query 15542 ATGGAAAAGGACTGCATTCTGGTGCACGGCGCCACCCAATTCCTCAACGAGCGCATGTTT 15601 ||||| || ||||| ||| ||||||| | | | || ||||||||| || || Sbjct 1078 ATGGAGCGCGATTGCATGGTGGGCTACGGCGCATCGAACCTGCTAAACGAGCGCTTGCTT 1019 Query 15602 CTCA 15605 ||| Sbjct 1018 ATCA 1015 >SEQ11735 Length=18701 Score = 82.4 bits (90), Expect = 9e-11 Identities = 124/174 (71%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 126208 TCCTTGCCTCCCTCCAACCGCGTGCCAAACTGACCGTCCGGCTCCAACAACTGCACATTG 126267 ||||| || |||| || |||||| ||||||||||||||| || | | | ||| Sbjct 15973 TCCTTTCCGCCCTGCAGCCGCGTACCAAACTGACCGTCCTTGCGCAGGAGAGGGATGTTG 16032 Query 126268 TTGGCTCCCACAAAGTCCTGCGCAAACTTGACAATGGTCTCGCAC-AGGTTCTGCTCGCC 126326 ||| || |||||||| || || | ||||| |||| |||| || ||||||||| Sbjct 16033 TTGCTGCCGACAAAGTCTTGTGCCATGCCCACAATCGTCT-GCACCAGCGACTGCTCGCC 16091 Query 126327 GTGCTTGTAGTCGGTCTGCTCGGCCACGTAGCCGCTCAGCTGCGCAACCTTGAT 126380 ||| | |||| ||| ||||| | ||||| ||| |||||| | |||||||| Sbjct 16092 GTGGTGGTAGGCGGAGTGCTCCGAGACGTAACCGGACAGCTGGACCACCTTGAT 16145 >SEQ11734 Length=18705 Score = 82.4 bits (90), Expect = 9e-11 Identities = 124/174 (71%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 126208 TCCTTGCCTCCCTCCAACCGCGTGCCAAACTGACCGTCCGGCTCCAACAACTGCACATTG 126267 ||||| || |||| || |||||| ||||||||||||||| || | | | ||| Sbjct 15973 TCCTTTCCGCCCTGCAGCCGCGTACCAAACTGACCGTCCTTGCGCAGGAGAGGGATGTTG 16032 Query 126268 TTGGCTCCCACAAAGTCCTGCGCAAACTTGACAATGGTCTCGCAC-AGGTTCTGCTCGCC 126326 ||| || |||||||| || || | ||||| |||| |||| || ||||||||| Sbjct 16033 TTGCTGCCGACAAAGTCTTGTGCCATGCCCACAATCGTCT-GCACCAGCGACTGCTCGCC 16091 Query 126327 GTGCTTGTAGTCGGTCTGCTCGGCCACGTAGCCGCTCAGCTGCGCAACCTTGAT 126380 ||| | |||| ||| ||||| | ||||| ||| |||||| | |||||||| Sbjct 16092 GTGGTGGTAGGCGGAGTGCTCCGAGACGTAACCGGACAGCTGGACCACCTTGAT 16145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611277111800800