Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq8796 179 7e-40 seq9113 176 8e-39 seq6209 163 5e-35 seq3668 163 5e-35 seq6451 147 4e-30 SEQ12307 87.8 3e-12 SEQ12306 87.8 3e-12 SEQ10924 87.8 3e-12 seq6480 87.8 3e-12 seq6479 87.8 3e-12 seq3394 87.8 3e-12 >seq8796 Length=7791 Score = 179 bits (198), Expect = 7e-40 Identities = 552/841 (66%), Gaps = 32/841 (4%) Strand=Plus/Minus Query 9934 TCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCT 9993 |||| ||||| |||||||||||||| ||| |||||||||||| | |||||||| Sbjct 7777 TCATCACGCCAGCCTTCTGGTACTCGCCAACCTTCTTCTCGAAGAAGTTCGTCTTGCCCT 7718 Query 9994 CGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAAC 10053 || || || | |||||||||||| ||||| | | || | ||||| | Sbjct 7717 GCAGCGAGATCATCTCCATGAAGTCGAAGGGCTGCGTCACGTTGTAGTGCTTCTCCAGCC 7658 Query 10054 CGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGT 10113 | || | | | ||||| || ||||||||||||||||| |||||| |||| || Sbjct 7657 CCAGCGACACCAGCAGCCGGTCCGCAACGAACTCGATGTACTGCGACATCAGCTCCGCGT 7598 Query 10114 TCATGCCAATCATGCGGCAGGGGATG-GCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172 ||||||| |||| || ||| || | |||||||| ||||| || ||| || ||| Sbjct 7597 TCATGCCGATCA-GCCGCACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACC 7539 Query 10173 GCTTCCTCGACGATGCTCTTTACCACG---TCAAGGGACAGCTTGTTCTCGAGCTTCGAA 10229 || ||| |||||| ||| | |||| || | | |||||||| || || | ||| Sbjct 7538 GCGTCC---ACGATGATCTCCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGAG 7482 Query 10230 T---ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTG 10286 | |||| || | || | | ||| || ||||||||||| ||| | ||||||| Sbjct 7481 TTGTACAGCAGGCACGCGAAGTCCGTGTGCAGCCCCTCGTCGCGCGAGATCAGCTCGTTG 7422 Query 10287 GACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGAC 10346 || ||| || ||||| ||||| || || ||||||||| | |||||||||||| Sbjct 7421 CTGAACGTCAGCCCAGGCATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGAC 7362 Query 10347 CCGGAGAACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGC 10404 || |||| |||||| |||||||| | | | ||| || ||||| |||| Sbjct 7361 CCCGAGA--AGAAGATGCCCTCCACCGCCGCGAACCCGATCAGCCGCTCCTGGAAGCTCG 7304 Query 10405 GGTCGCGCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCT 10464 | ||| | | | | |||||| | |||||||| | | |||||||||| Sbjct 7303 CGCCGCTCCCGATCCACCGCACAGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCT 7244 Query 10465 CGATAGCCT--CGAAG----AGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAA 10518 ||| || | | || ||||| | |||| | |||| || | || | Sbjct 7243 GGATCGCGTGCAGCAGCCGCAGCTTCT---CCTCGCT---GTCCGTGATGTACGTGTCCA 7190 Query 10519 GGAGCAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACA 10578 | |||| ||||| ||| ||||| | |||| | | |||| | |||||||| Sbjct 7189 GCAGCACCGAGTACGTCTCCGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAGAACG 7130 Query 10579 TACGTGCCGAGGGGTCCGTGACTTC-CTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACC 10637 || ||| || || | || || ||| ||| | ||||||||| ||||| Sbjct 7129 CGCGCGCCTCCGGCACCTTCACGTCGCTC-ATGAAGCGCTGCGCCAGGTTCTCAATCACG 7071 Query 10638 ATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCG 10697 ||||| |||||||| |||||||| | || | ||||||||||||||| ||||| | ||| Sbjct 7070 ATGCCGTCGCTGCCGGCAAAGAACGCCAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCG 7011 Query 10698 TTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAG 10757 ||||| | || |||||| || || | | ||| | || |||||||| |||||| Sbjct 7010 TTCAGCCTCTC---CCAGTCCTTCATGTCGTTGCCGAGGTCGATCTCCTCCAGCGTCCAG 6954 Query 10758 A 10758 | Sbjct 6953 A 6953 >seq9113 Length=16536 Score = 176 bits (194), Expect = 8e-39 Identities = 407/602 (68%), Gaps = 15/602 (2%) Strand=Plus/Minus Query 31701 CACACCGCCGTTTCGTCCGTAGAAGTGTATTCGACAATCTCGGCACAAAGATTGCTGCCC 31760 |||||||| || || |||| || ||||| || |||||||||| || || || || | Sbjct 6225 CACACCGCGGTCTCCTCCGGCGACGTGTACTCCACAATCTCGGTGCAGAGGTTCGAGCAC 6166 Query 31761 GTGATGGTGCCGGCATTGGACTGCATGTTCTTCACGTT-CACGCTGTCCTTGTTGAGCAC 31819 ||||||||||| || ||| | ||| ||| ||||| |||||||| ||| | Sbjct 6165 TTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCTGTTGCACGC-GTCCTTGTAGAGGAT 6107 Query 31820 GTAAGGCATGCCCGTCTCGATCTGCGTGATGATCATCGCATTCCAGACATCGCGCGCTTT 31879 | | || | ||| ||||||||||||| || |||||| ||| || || | || | Sbjct 6106 GAACGGGACGCCGGTCTCGATCTGCGACTCGAGAATCGCAAACCACACCTCCTGTGCCTG 6047 Query 31880 GA-CGACTTTCTTCGCACGCCCCTCGGACTCGTAGCGAAGATACAGGTCCTCGTACTCCT 31938 || || || || | || ||||| | ||||||||| ||||||| |||| |||||| Sbjct 6046 GATCGTCTGCACTC-CGCGGCCCTCCGCCTCGTAGCGCTCATACAGGCGCTCGAACTCCT 5988 Query 31939 TGCCAAAGGCATCGGTTAGACCGGGACAC-TCCTTGGGGTCGAAGAGCGACCATGCGACA 31997 ||| || ||| | || || || ||| | |||||| || | |||| ||| | Sbjct 5987 CGCCGTAGCAGTCGCTGAGGCCCGGGCACGTGCTTGGG-TCCATCAGCGTCCACTTCCCC 5929 Query 31998 TCGGCCTCTACTCGCTTCATGAACAGGTCGTTCAGCCACATCGCGTAAAACAGATTCCTG 32057 || || || |||||||||||||||||| | ||||| |||||| || || | | Sbjct 5928 TCACTCTTCACGCGCTTCATGAACAGGTCGGGGATCCACAGCGCGTAGAAGAGGTCGCGC 5869 Query 32058 GCGCGTTGGGTCTCCTCACCCTGGTTACGTCGGAGCAGCAGGAAGTCCATGATGTCGGGG 32117 || || ||| |||| || ||| || |||||||||||| | | |||||||| | Sbjct 5868 GCACGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAGGAAGCCGAAGATGTCGGCG 5809 Query 32118 TGGTGGGGCTCGAGGTACACGGCGAAAGATCCCTTGCG---GCGACCCCCCTGGTTTGCG 32174 || ||||||||||| | |||||| | |||||||| | || ||||||| || Sbjct 5808 TGCCACGGCTCGAGGTAAATGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTCCACG 5749 Query 32175 TATGCAGATGTCGTGTCGT---ACACCTTCAGCATGGGTACGATGCCATCAGACTCGCCA 32231 || || | | ||||| || |||| |||||| || || | ||| | ||| ||| Sbjct 5748 TA-GCGG--GCCGTGTTGTTGAACACGCGCAGCATCGGCACCAGGCCGTTCGACGTGCCG 5692 Query 32232 TTGGTCCCCTGGATCTTGGAACCACGGCCGCGAATGTCGCTCAGGTGCAGGCCGATGCCG 32291 || || || ||| | | || | ||| |||| | || |||||||||||||||| Sbjct 5691 TTCGTGCCAGCGATGTAGCTGCCGGCGGAGCGGATGTTGTGCACGTGCAGGCCGATGCCG 5632 Query 32292 CC 32293 || Sbjct 5631 CC 5630 >seq6209 Length=3470 Score = 163 bits (180), Expect = 5e-35 Identities = 307/445 (69%), Gaps = 15/445 (3%) Strand=Plus/Minus Query 9934 TCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCT 9993 |||| ||||| |||||||||||||| ||| |||||||||||| | |||||||| Sbjct 675 TCATCACGCCAGCCTTCTGGTACTCGCCAACCTTCTTCTCGAAGAAGTTCGTCTTGCCCT 616 Query 9994 CGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAAC 10053 || || || | |||||||||||| ||||| | | || | ||||| | Sbjct 615 GCAGCGAGATCATCTCCATGAAGTCGAAGGGCTGCGTCACGTTGTAGTGCTTCTCCAGCC 556 Query 10054 CGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGT 10113 | || | | | ||||| || ||||||||||||||||| |||||| |||| || Sbjct 555 CCAGCGACACCAGCAGCCGGTCCGCAACGAACTCGATGTACTGCGACATCAGCTCCGCGT 496 Query 10114 TCATGCCAATCATGCGGCAGGGGATG-GCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172 ||||||| |||| || ||| || | |||||||| ||||| || ||| || ||| Sbjct 495 TCATGCCGATCA-GCCGCACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACC 437 Query 10173 GCTTCCTCGACGATGCTCTTTACCACG---TCAAGGGACAGCTTGTTCTCGAGCTTCGAA 10229 || ||| |||||| ||| | |||| || | | |||||||| || || | ||| Sbjct 436 GCGTCC---ACGATGATCTCCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGAG 380 Query 10230 T---ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTG 10286 | |||| || | || | | ||| || ||||||||||| ||| | ||||||| Sbjct 379 TTGTACAGCAGGCACGCGAAGTCCGTGTGCAGCCCCTCGTCGCGCGAGATCAGCTCGTTG 320 Query 10287 GACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGAC 10346 || ||| || ||||| ||||| || || ||||||||| | |||||||||||| Sbjct 319 CTGAACGTCAGCCCAGGCATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGAC 260 Query 10347 CCGGAGAACAGAAGA--CCCTCCAC 10369 || |||| |||||| |||||||| Sbjct 259 CCCGAGA--AGAAGATGCCCTCCAC 237 >seq3668 Length=3103 Score = 163 bits (180), Expect = 5e-35 Identities = 177/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| || | ||| ||||| ||||| || |||||||| || || | | Sbjct 161 CCACCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 220 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || ||||| || || Sbjct 221 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 280 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| |||||||| ||||| ||| |||||||||||| ||| | || || Sbjct 281 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTCTCGATGGTGTC-GCTCGCCTCGAC 339 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | || ||| || || || || |||||||| ||||| |||||||| ||| Sbjct 340 CTCGAGGGCGATCGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCATGATG 391 >seq6451 Length=1481 Score = 147 bits (162), Expect = 4e-30 Identities = 165/218 (76%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 68245 GGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCC 68304 |||||| || | ||| ||||| ||||| || |||||||| || || | ||| || | | Sbjct 1 GGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGC 60 Query 68305 CATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCT 68364 | ||||| | |||||| ||||| || || || | || ||||| || || ||||| |||| Sbjct 61 CCTCTTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCT 120 Query 68365 TGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTG 68423 |||| |||||||| ||||| ||| |||||||||||| ||| | || || || | || | Sbjct 121 TGTCCTGAATCTTCGCCTTCACGTTCTCGATGGTGTC-GCTCGCCTCGACCTCGAGGGCG 179 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || || |||||||| || || |||||||| Sbjct 180 ATCGTCTTACCGGTCAGGGTCTTCACAAAGATCTGCAT 217 >SEQ12307 Length=3721 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 1946 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 2003 >SEQ12306 Length=3722 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 1947 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 2004 >SEQ10924 Length=26219 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 19122 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 19179 >seq6480 Length=1404 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 1273 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 1216 >seq6479 Length=1393 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 1264 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 1207 >seq3394 Length=21678 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 217 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921449215630760