Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq9113 448 9e-121 seq8796 329 6e-85 seq6209 269 5e-67 >seq9113 Length=16536 Score = 448 bits (496), Expect = 9e-121 Identities = 1080/1612 (67%), Gaps = 43/1612 (3%) Strand=Plus/Minus Query 243868 CAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGT 243927 ||| |||||||| || |||||| |||||| | | | | | || || ||||||| Sbjct 7039 CAGGAAGAGGTTCAGCGACTGGGACTGGTCAATGTACTGGCCGCGGTCGCGGGCCATGTC 6980 Query 243928 GATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGG 243987 ||| || | ||| | ||||| || |||| ||| | ||| |||| || || Sbjct 6979 GATCAGCTTGCGCTGCGGGATCTCCCACACCGTGCGGTACAGCTCCTTCAGGTCGTCCGG 6920 Query 243988 GAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATC 244047 || | |||||| || |||| ||||| |||| | ||||| || | ||||||| | || Sbjct 6919 GATGCTGTCGATGGTCAGCACGGAGCCGTTGTAGGAGATGATCTCGTTGCGCATCGTCTC 6860 Query 244048 GTTCCACAGGCCCAAGCGCTCCA---GCGCCTCGACCAGGTGCCTGTTCACCACCTGAAA 244104 ||||||||||| ||||| | | || || |||| | ||||||||||| | || Sbjct 6859 ATTCCACAGGCC---GCGCTTAATGAGGTCCATCACGAGGTACTTGTTCACCACCGGGAA 6803 Query 244105 CTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGT 244164 ||| || ||||||||| || |||| ||| | ||| ||||||| || ||| | Sbjct 6802 CTCGCCGCTCAGCACGCGACGAACATAGATGTTCGAGGTGAAAGGCTCGAAGCACTCGTT 6743 Query 244165 GTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCT 244224 |||||| || || |||| || || || ||||| |||| | ||| ||| ||| | Sbjct 6742 GTTGCCGAGGATTTGCGAGGTCGAGGCGGTGGGCATCGGCGCAAGCAGGAGAGAGTTGCG 6683 Query 244225 CACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTC 244284 || |||| | | | | |||| || ||| |||||| ||| | || Sbjct 6682 CATGCCGACCTGCACCACCTTCTGCTTGAGGCTGTCCCAATCCCACCGGCC---GCTGTT 6626 Query 244285 CTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTC 244344 | ||| | ||||||||| |||||||| | |||| ||| | |||||||||| Sbjct 6625 CGGGCGCGGGTTCTTCCACATGTCGAACTGCAGGATGCCCTGACTGGCCGGGCTGCCCTT 6566 Query 244345 GTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCT-CTCGTCGAGGGCGGCGT 244403 | ||||| |||||| || || || ||||||| || | | || | ||| ||| Sbjct 6565 GAAGGTCTCGTAGGGGCCCTCCTCCTTCGCCAGCTC-CATCGACGACTCCACGGCAGCGA 6507 Query 244404 AGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGG-GCCTTGCCGCAGGTGAAGGGG 244462 ||||||| || ||||||||| | ||||| | ||| | |||| || || |||||| Sbjct 6506 AGTAGATCGTTTCGAAGATCTCCGCGTTCACG-CGCTGCGCCTCAGGGCTGGCGAAGGGC 6448 Query 244463 ATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGT 244522 | || || || |||||| |||| ||||| || |||||||| | ||||| || | || Sbjct 6447 AGGCGCAGCAGGATGAAGGCGTCCGCCAGGCCTTGCACGCCCAGGCCGACCGGGCGGTTG 6388 Query 244523 CGCTTGTTGGAGCG---CATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTG 244579 ||| ||||| ||| | || || ||| ||||| |||||| ||| || || | Sbjct 6387 CGCATGTTGCTGCGGTACGCGGTCTC---CACCGGGTAGTAGTTGCGGTCAATGACGCGG 6331 Query 244580 TTGAGGTTGCGGGTGATCATGCGGACG--ACGTCGGCCAGCAGCTGAAAGTCGTACTCGT 244637 || |||||||| |||||| ||| || ||| | ||||||||| ||| |||| Sbjct 6330 TTCAGGTTGCGCGTGATC-TGCTT-CGTCACGCTGTACAGCAGCTGGTGATCGATCTCGC 6273 Query 244638 AGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTG-AGGGCGACGCTGGCCAGGTTG 244696 ||||| || |||| || || | ||||||| | ||| |||||| Sbjct 6272 GCTTCTCCTC----------AT--TCACGAAG-CGCGGCAGGGCGATGGAGGCGAGGTTG 6226 Query 244697 CAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCAC 244756 || || || |||||||| ||||||| |||||||||||||||||||| |||| Sbjct 6225 CACACCGCGGTCTCCTCCGGCGACGTGTACTCCACAATCTCGGTGCAGAGGTTCGAGCAC 6166 Query 244757 TTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG 244816 ||||||||||| |||| || || || |||||| |||||| |||||||||||||| ||| Sbjct 6165 TTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCTGTTGCACGCGTCCTTGTAGAGGATG 6106 Query 244817 AAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGAGGTCCCTAGCCTT 244875 || || | |||||||||| ||| | |||| | ||| ||| | ||| |||| Sbjct 6105 AACGGGACGCCGGTCTCGATCTGCGACTCGAGAATCGC-AAACCACACCTCCTGTGCCTG 6047 Query 244876 GACCGTCCTGCGAGCC-TTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGG 244934 || ||| |||| || |||||| ||||||||||| |||||| ||||||||| Sbjct 6046 GATCGT-CTGCACTCCGCGGCCCTCCGCCTCGTAGCGCTCATACAGGCGCTCGAACTCCT 5988 Query 244935 GGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGC 244994 ||| || ||| ||||| ||||||| ||| ||| || |||||| || Sbjct 5987 CGCCGTAGCAGTCGCTGAGGCCCGGGCACGTGCTTGGGTCCATCAGCGTCCACTTCCCCT 5928 Query 244995 CGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGG 245054 | ||| || | || |||||| |||||||||||||| || || | ||||||||| | | Sbjct 5927 CACTCTTCACGCGCTTCATGAACAGGTCGGGGATCCACAGCGCGTAGAAGAGGTCGCGCG 5868 Query 245055 TCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGT 245114 | ||| |||||| ||| ||||| | ||||| || ||| | |||| |||| ||| Sbjct 5867 CACGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAGGAAGCCGAAGATGTCGGCGT 5808 Query 245115 GCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC-C 245173 |||| ||||| | ||| | |||| |||||| ||||| ||| ||||||||||| Sbjct 5807 GCCACGGCTCGAGGTAAATGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTCCACGT 5748 Query 245174 ATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTG 245233 | | || | |||||| | |||||| | ||||| | |||||| || |||||| Sbjct 5747 AGCGGGCCGTG-TTGTTGAACACGCGCAGCATCGGCACCAGGCCGTTCGACGTGCCGTTC 5689 Query 245234 GTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCG 245293 ||||| ||||||| ||| | | || |||| | | || ||| | |||||| Sbjct 5688 GTGCCAGCGATGTAGCTGCCGGCGGAGCGGATGTTGTGCACGTGCAGGCCGATGCCGCCG 5629 Query 245294 GCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCC 245353 || |||| ||||| |||||| ||| | ||||| || || || |||||||| Sbjct 5628 GCCGCCTTGCTGATGACGGCGCACTCCTTCAGCGTGTCGTAAATCCCGTCAATGCTGTCG 5569 Query 245354 GACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAAC 245413 |||| || || ||||| ||| || ||| ||||| || ||| | |||||| Sbjct 5568 TCCTTCGACGCGACGAGGAAGCACGAGCTCATCTGCGGCTTTGGTGTGCCGGCGTTGAAG 5509 Query 245414 AGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCT 245465 || || ||| ||||||| || || ||| |||| | | ||||||||| Sbjct 5508 AGGGTCGGGGTGGCGTGCGTGAAAAAGCCCTTCGACATCAGATCGTACGTCT 5457 >seq8796 Length=7791 Score = 329 bits (364), Expect = 6e-85 Identities = 595/860 (69%), Gaps = 15/860 (2%) Strand=Plus/Plus Query 42292 ACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGA 42351 |||| ||||||||| || ||||||| || | || || || |||||| ||||||| Sbjct 6911 ACCACGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGCTGGAGGAGA 6970 Query 42352 TTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCC 42411 | ||||| | ||| |||| | | ||||||| ||| || || | ||| Sbjct 6971 TCGACCTCGGCAACGACATGAAGGACTGGGAGAGGCTGAACGACGGGGAGCGGCACTTCA 7030 Query 42412 TCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGC-C 42470 |||| || | ||||| ||||| |||| | |||||||| || | |||||||||||| | Sbjct 7031 TCAAGCACGTGCTGGCGTTCTTTGCCGGCAGCGACGGCATCGTGATTGAGAACCTGGCGC 7090 Query 42471 ACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATA 42530 | | | ||||||| || ||| || ||||||||| |||||||| |||||| | Sbjct 7091 AGC-GCTTCATGAGCGACGTGAAGGTGCCGGAGGCGCGCGCGTTCTACGGGTTCCAGCTG 7149 Query 42531 GCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGAT 42590 || |||||| | ||||| ||| |||| | ||||| ||||||||||| ||| Sbjct 7150 ATGATGGAGAACATCCACTCGGAGACGTACTCGGTGCTGCTGGACACGTACATCACGGAC 7209 Query 42591 CCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAG 42650 || ||| ||||| | | || || ||||||| || |||||| |||||||| Sbjct 7210 AGCGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGATCCCGTGCATCCAGAAGAAG 7269 Query 42651 GCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTA 42710 ||||| ||||| | ||||||| ||| || ||| | ||| ||| ||||| | Sbjct 7270 GCGGAGTGGGCTGTGCGGTGGATCGGGAG---CGGCGCGAGCTTCCAGGAGCGGCTGATC 7326 Query 42711 GCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTC 42770 | || | || || |||||||||||||||||||| | ||| | | | |||||||| Sbjct 7327 GGGTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGCGCGCTGTTCTGGCTG 7386 Query 42771 AAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAG 42830 ||| || | | |||||| || || || ||| ||||| || ||| | |||||| Sbjct 7387 AAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAG 7446 Query 42831 GGGCTGCATAGGGACTTTGCCTGCCTCCTGT---TCTCGAGCCACCTCAGGCACAAGCCC 42887 |||||||| | |||||| || ||||| |||| |||| ||| ||| |||||||| Sbjct 7447 GGGCTGCACACGGACTTCGCGTGCCTGCTGTACAACTCG---CACATCAAGCACAAGCTG 7503 Query 42888 TCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTC 42947 || ||||| || | || |||||| ||| || ||| | |||||| |||||| || Sbjct 7504 CCGCGCGAGCGCGTGCTGGAGATCATCGTGGACGCGGTGAACATCGAGCGCGAGTTCATC 7563 Query 42948 ACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATC 43007 | ||||||| ||| ||| ||||||||||| || || |||| |||||||| Sbjct 7564 TGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATC 7623 Query 43008 CAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCT-CAGCCGCCTCTACAACACGC 43065 ||| ||| || |||| || || ||| | | |||| || || | | ||||||| | Sbjct 7624 GAGTTCGTTGCGGACCGGCTGCTGGTGTC-GCTGGGGCTGGAGAAG-CACTACAACGTGA 7681 Query 43066 CGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGA 43125 || ||||||||||| ||||||| |||||| || |||||||||| ||||| ||||||| Sbjct 7682 CGCAGCCCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGA 7741 Query 43126 AGCGCGTCGCCGACTACCAG 43145 || || | ||| |||||| Sbjct 7742 AGAAGGTTGGCGAGTACCAG 7761 >seq6209 Length=3470 Score = 269 bits (298), Expect = 5e-67 Identities = 454/650 (70%), Gaps = 13/650 (2%) Strand=Plus/Plus Query 42501 GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTAC 42560 ||||||||| |||||||| |||||| | || |||||| | ||||| ||| |||| Sbjct 18 GAGGCGCGCGCGTTCTACGGGTTCCAGCTGATGATGGAGAACATCCACTCGGAGACGTAC 77 Query 42561 GCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCC 42620 | ||||| ||||||||||| ||| || ||| ||||| | | || Sbjct 78 TCGGTGCTGCTGGACACGTACATCACGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCG 137 Query 42621 ATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGT 42680 || ||||||| || |||||| ||||||||||||| ||||| | ||||||| ||| Sbjct 138 ATCCAGACGATCCCGTGCATCCAGAAGAAGGCGGAGTGGGCTGTGCGGTGGATCGGGAG- 196 Query 42681 CCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTC 42740 || ||| | ||| ||| ||||| | | || | || || ||||||||||||||| Sbjct 197 --CGGCGCGAGCTTCCAGGAGCGGCTGATCGGGTTCGCGGCGGTGGAGGGCATCTTCTTC 254 Query 42741 TCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACC 42800 ||||| | ||| | | | |||||||| ||| || | | |||||| || || || Sbjct 255 TCGGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACG 314 Query 42801 TTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTG 42860 ||| ||||| || ||| | |||||||||||||| | |||||| || ||||| ||| Sbjct 315 TTCAGCAACGAGCTGATCTCGCGCGACGAGGGGCTGCACACGGACTTCGCGTGCCTGCTG 374 Query 42861 T---TCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACG 42917 | |||| ||| ||| |||||||| || ||||| || | || |||||| | Sbjct 375 TACAACTCG---CACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTGGAGATCATCGTG 431 Query 42918 GAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGC 42977 || || ||| | |||||| |||||| || | ||||||| ||| ||| ||||| Sbjct 432 GACGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATCGGC 491 Query 42978 ATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCA 43036 |||||| || || |||| |||||||| ||| ||| || |||| || || ||| | Sbjct 492 ATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTTGCGGACCGGCTGCTGGTGTC- 550 Query 43037 GATGGGTCT-CAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCT 43095 | |||| || || | | ||||||| | || ||||||||||| ||||||| |||| Sbjct 551 GCTGGGGCTGGAGAAG-CACTACAACGTGACGCAGCCCTTCGACTTCATGGAGATGATCT 609 Query 43096 CGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 || || |||||||||| ||||| ||||||||| || | ||| |||||| Sbjct 610 CGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTTGGCGAGTACCAG 659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944161746860080