Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3668 158 3e-33 seq6451 140 8e-28 SEQ14990 138 3e-27 seq5330 89.7 1e-12 SEQ11243 84.2 5e-11 SEQ11242 84.2 5e-11 SEQ11241 84.2 5e-11 seq1102 84.2 5e-11 >seq3668 Length=3103 Score = 158 bits (174), Expect = 3e-33 Identities = 174/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || ||||| || | ||| || || ||||| || ||||| ||| Sbjct 161 CCACCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 220 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | || || || ||||||||||| ||||| || ||| Sbjct 221 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 280 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || ||||| |||||||| || || | ||||||| || || Sbjct 281 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACC 340 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGT 288478 ||||| | ||||||||| |||||||| ||||| ||||| |||||||| |||| Sbjct 341 TCGAGGGCGATCGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCATGATGT 392 >seq6451 Length=1481 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || ||||| || | ||| || || ||||| || ||||| ||||||||||| || ||| Sbjct 6 AGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCT 65 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || || || |||||||| ||||| || ||||| || || || ||| Sbjct 66 TCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 125 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 || || ||||| |||||||| || || | ||||||| || || ||||| | ||||||| Sbjct 126 TGAATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCGTC 185 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||| ||||| || || |||||||| Sbjct 186 TTACCGGTCAGGGTCTTCACAAAGATCTGCAT 217 >SEQ14990 Length=15354 Score = 138 bits (152), Expect = 3e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || |||||||| || | || || || || | ||| || || ||||| || ||||| Sbjct 9183 TGGCCACCGCGCAGGCGCAGCACNAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCC 9124 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 ||||||||||| || || || | || || || ||||||||||| ||||| || Sbjct 9123 GCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGC 9064 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || || ||||| || ||||| |||||||| || || | ||||| | || Sbjct 9063 GGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCG 9004 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 || || |||| || ||||| |||||||| ||||| ||||| |||||||| || Sbjct 9003 ACCTCCAGCGCAATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGAT 8951 >seq5330 Length=12009 Score = 89.7 bits (98), Expect = 1e-12 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || ||||| || | ||| || || ||||| || ||||| ||| Sbjct 154 CCACCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 95 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | || || || ||||||||||| ||||| || ||| Sbjct 94 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 35 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGT 288400 || || || || ||||| || ||||| ||||||| Sbjct 34 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGT 1 >SEQ11243 Length=5724 Score = 84.2 bits (92), Expect = 5e-11 Identities = 127/178 (71%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 325337 GCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAG-TT 325395 ||||| || |||||| |||| | ||| ||||||||||||||||| | | | ||| || Sbjct 3124 GCGTGGTCGTTACCAAGCTGCTGACGCGAGCCGAACTGGCCCTCCGGGA-CGAGCAGATT 3066 Query 325396 GATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGC 325455 |||||| |||| || | | | ||| || | |||||||||||| | ||||| || || Sbjct 3065 GATGTTGTTGCCACCCGTAAAGTTCTGCGCCATCTTCACGATGGTCTCCTGCAGCGACGC 3006 Query 325456 TTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTC 325513 || || ||||| ||||| ||| | | ||| ||| || ||| || |||||| Sbjct 3005 CTCTCCGTGGTGGAAGGCGGAGACCTCCGAGATGTAGCCGGAGAGCTGCGCCACCTTC 2948 >SEQ11242 Length=6155 Score = 84.2 bits (92), Expect = 5e-11 Identities = 127/178 (71%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 325337 GCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAG-TT 325395 ||||| || |||||| |||| | ||| ||||||||||||||||| || | ||| || Sbjct 1960 GCGTGGTCGTTACCAAGCTGCTGACGCGAGCCGAACTGGCCCTCCGG-GACGAGCAGATT 2018 Query 325396 GATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGC 325455 |||||| |||| || | | | ||| || | |||||||||||| | ||||| || || Sbjct 2019 GATGTTGTTGCCACCCGTAAAGTTCTGCGCCATCTTCACGATGGTCTCCTGCAGCGACGC 2078 Query 325456 TTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTC 325513 || || ||||| ||||| ||| | | ||| ||| || ||| || |||||| Sbjct 2079 CTCTCCGTGGTGGAAGGCGGAGACCTCCGAGATGTAGCCGGAGAGCTGCGCCACCTTC 2136 >SEQ11241 Length=6144 Score = 84.2 bits (92), Expect = 5e-11 Identities = 127/178 (71%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 325337 GCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAG-TT 325395 ||||| || |||||| |||| | ||| ||||||||||||||||| || | ||| || Sbjct 1960 GCGTGGTCGTTACCAAGCTGCTGACGCGAGCCGAACTGGCCCTCCGG-GACGAGCAGATT 2018 Query 325396 GATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGC 325455 |||||| |||| || | | | ||| || | |||||||||||| | ||||| || || Sbjct 2019 GATGTTGTTGCCACCCGTAAAGTTCTGCGCCATCTTCACGATGGTCTCCTGCAGCGACGC 2078 Query 325456 TTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTC 325513 || || ||||| ||||| ||| | | ||| ||| || ||| || |||||| Sbjct 2079 CTCTCCGTGGTGGAAGGCGGAGACCTCCGAGATGTAGCCGGAGAGCTGCGCCACCTTC 2136 >seq1102 Length=5703 Score = 84.2 bits (92), Expect = 5e-11 Identities = 127/178 (71%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 325337 GCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAG-TT 325395 ||||| || |||||| |||| | ||| ||||||||||||||||| || | ||| || Sbjct 2580 GCGTGGTCGTTACCAAGCTGCTGACGCGAGCCGAACTGGCCCTCCGG-GACGAGCAGATT 2638 Query 325396 GATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGC 325455 |||||| |||| || | | | ||| || | |||||||||||| | ||||| || || Sbjct 2639 GATGTTGTTGCCACCCGTAAAGTTCTGCGCCATCTTCACGATGGTCTCCTGCAGCGACGC 2698 Query 325456 TTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTC 325513 || || ||||| ||||| ||| | | ||| ||| || ||| || |||||| Sbjct 2699 CTCTCCGTGGTGGAAGGCGGAGACCTCCGAGATGTAGCCGGAGAGCTGCGCCACCTTC 2756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179427186397374