Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq8796 89.7 1e-12 seq6209 89.7 1e-12 SEQ11243 87.8 4e-12 SEQ11242 87.8 4e-12 SEQ11241 87.8 4e-12 seq1102 87.8 4e-12 >seq8796 Length=7791 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 243532 GAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGA 243591 || ||||| |||||||| | || ||||| || ||||||||| | || || ||| Sbjct 7555 GAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAACGCGGAGCTGATGTCG 7614 Query 243592 CAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTAC 243651 ||||||||||| ||||| || ||||| | | | |||| || ||||| ||| Sbjct 7615 CAGTACATCGAGTTCGTTGCGGACCGGCTGCTGGTGTCGCTGGGGCTGGAGAAGCACTAC 7674 Query 243652 AACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTC 243711 ||| | | | ||||| | ||| |||||| | || ||||| || || || || |||||| Sbjct 7675 AACGTGACGCAGCCCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 7734 Query 243712 TTCGAAAAG 243720 ||||| ||| Sbjct 7735 TTCGAGAAG 7743 >seq6209 Length=3470 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 243532 GAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGA 243591 || ||||| |||||||| | || ||||| || ||||||||| | || || ||| Sbjct 453 GAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAACGCGGAGCTGATGTCG 512 Query 243592 CAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTAC 243651 ||||||||||| ||||| || ||||| | | | |||| || ||||| ||| Sbjct 513 CAGTACATCGAGTTCGTTGCGGACCGGCTGCTGGTGTCGCTGGGGCTGGAGAAGCACTAC 572 Query 243652 AACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTC 243711 ||| | | | ||||| | ||| |||||| | || ||||| || || || || |||||| Sbjct 573 AACGTGACGCAGCCCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 632 Query 243712 TTCGAAAAG 243720 ||||| ||| Sbjct 633 TTCGAGAAG 641 >SEQ11243 Length=5724 Score = 87.8 bits (96), Expect = 4e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 297431 AGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCG 297490 ||||| ||||| || || || | ||||| || |||||| |||| | ||| ||| Sbjct 3151 AGTTTCGTGAAGATGTAGCGCGGCGCGGCGTGGTCGTTACCAAGCTGCTGACGCGAGCCG 3092 Query 297491 AACTGGCCCTCCGGCAACAACCAG-TTGATGTTATTGCTTCCGACATAATCCTGTGCAAG 297549 |||||||||||||| | | | ||| |||||||| |||| || | | | ||| || | Sbjct 3091 AACTGGCCCTCCGGGA-CGAGCAGATTGATGTTGTTGCCACCCGTAAAGTTCTGCGCCAT 3033 Query 297550 GTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAAC 297609 |||||||||||| | ||||| || || || || ||||| ||||| ||| | | Sbjct 3032 CTTCACGATGGTCTCCTGCAGCGACGCCTCTCCGTGGTGGAAGGCGGAGACCTCCGAGAT 2973 Query 297610 GTAACCGCTGAACTGTGCAACCTTC 297634 ||| ||| || ||| || |||||| Sbjct 2972 GTAGCCGGAGAGCTGCGCCACCTTC 2948 >SEQ11242 Length=6155 Score = 87.8 bits (96), Expect = 4e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 297431 AGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCG 297490 ||||| ||||| || || || | ||||| || |||||| |||| | ||| ||| Sbjct 1933 AGTTTCGTGAAGATGTAGCGCGGCGCGGCGTGGTCGTTACCAAGCTGCTGACGCGAGCCG 1992 Query 297491 AACTGGCCCTCCGGCAACAACCAG-TTGATGTTATTGCTTCCGACATAATCCTGTGCAAG 297549 |||||||||||||| || | ||| |||||||| |||| || | | | ||| || | Sbjct 1993 AACTGGCCCTCCGG-GACGAGCAGATTGATGTTGTTGCCACCCGTAAAGTTCTGCGCCAT 2051 Query 297550 GTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAAC 297609 |||||||||||| | ||||| || || || || ||||| ||||| ||| | | Sbjct 2052 CTTCACGATGGTCTCCTGCAGCGACGCCTCTCCGTGGTGGAAGGCGGAGACCTCCGAGAT 2111 Query 297610 GTAACCGCTGAACTGTGCAACCTTC 297634 ||| ||| || ||| || |||||| Sbjct 2112 GTAGCCGGAGAGCTGCGCCACCTTC 2136 >SEQ11241 Length=6144 Score = 87.8 bits (96), Expect = 4e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 297431 AGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCG 297490 ||||| ||||| || || || | ||||| || |||||| |||| | ||| ||| Sbjct 1933 AGTTTCGTGAAGATGTAGCGCGGCGCGGCGTGGTCGTTACCAAGCTGCTGACGCGAGCCG 1992 Query 297491 AACTGGCCCTCCGGCAACAACCAG-TTGATGTTATTGCTTCCGACATAATCCTGTGCAAG 297549 |||||||||||||| || | ||| |||||||| |||| || | | | ||| || | Sbjct 1993 AACTGGCCCTCCGG-GACGAGCAGATTGATGTTGTTGCCACCCGTAAAGTTCTGCGCCAT 2051 Query 297550 GTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAAC 297609 |||||||||||| | ||||| || || || || ||||| ||||| ||| | | Sbjct 2052 CTTCACGATGGTCTCCTGCAGCGACGCCTCTCCGTGGTGGAAGGCGGAGACCTCCGAGAT 2111 Query 297610 GTAACCGCTGAACTGTGCAACCTTC 297634 ||| ||| || ||| || |||||| Sbjct 2112 GTAGCCGGAGAGCTGCGCCACCTTC 2136 >seq1102 Length=5703 Score = 87.8 bits (96), Expect = 4e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 297431 AGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCG 297490 ||||| ||||| || || || | ||||| || |||||| |||| | ||| ||| Sbjct 2553 AGTTTCGTGAAGATGTAGCGCGGCGCGGCGTGGTCGTTACCAAGCTGCTGACGCGAGCCG 2612 Query 297491 AACTGGCCCTCCGGCAACAACCAG-TTGATGTTATTGCTTCCGACATAATCCTGTGCAAG 297549 |||||||||||||| || | ||| |||||||| |||| || | | | ||| || | Sbjct 2613 AACTGGCCCTCCGG-GACGAGCAGATTGATGTTGTTGCCACCCGTAAAGTTCTGCGCCAT 2671 Query 297550 GTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAAC 297609 |||||||||||| | ||||| || || || || ||||| ||||| ||| | | Sbjct 2672 CTTCACGATGGTCTCCTGCAGCGACGCCTCTCCGTGGTGGAAGGCGGAGACCTCCGAGAT 2731 Query 297610 GTAACCGCTGAACTGTGCAACCTTC 297634 ||| ||| || ||| || |||||| Sbjct 2732 GTAGCCGGAGAGCTGCGCCACCTTC 2756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102667573938550