Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq9113 161 1e-34 seq8796 125 9e-24 seq6209 125 9e-24 >seq9113 Length=16536 Score = 161 bits (178), Expect = 1e-34 Identities = 1072/1699 (63%), Gaps = 55/1699 (3%) Strand=Plus/Minus Query 113588 GCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGC 113647 ||||| | || |||||||||| |||||||| || ||| || ||| | || | || Sbjct 7131 GCCTTCGTGCGCAGGTAGTACACACCCGTCTTCAGACCCGACTCCCACGTGTAGAAGAGC 7072 Query 113648 ATCGAGGACAACTTGGA-GAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTG 113706 ||||| | | || | ||| || || |||| || ||||||||||| ||||| || Sbjct 7071 ATCGACGTGATCTGGCCCGAG-GTGGGGCTTTGCAGGAAGAGGTTCAGCGACTGGGACTG 7013 Query 113707 ATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCA 113766 || ||| | | || || || ||||| || |||| | | | ||| ||||| Sbjct 7012 GTCAATGTACTGGCCGCGGTCGCGGGCCATGTCGATCAGCTTGCGCTGCGGGATCTCCCA 6953 Query 113767 CACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCC 113826 ||| || | ||| || | ||| | || || ||||| |||| | | | |||||| Sbjct 6952 CACCGTGCGGTACAGCTCCTTCAGGTCGTCCGGGATGCTGTCGATGGTCAGCACGGAGCC 6893 Query 113827 ACCCGCCTTGACCATGAGATCCTT-CATATCCTTTGA--CCAGAGACCAATCTTTTTGAG 113883 | | |||| || || | ||| | | | ||| || || ||| |||| Sbjct 6892 GTTG---TAGGAGATGATCTCGTTGCGCATCGTCTCATTCCACAGGCCGCGCTTAATGAG 6836 Query 113884 ATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATA 113943 ||| |||||| | ||| || || || ||||| || || ||| | | ||| Sbjct 6835 GTCCATCACGAGGTACTTGTTCACCACCGGGAACTCGCCGCTCAGCACGCGACGAACATA 6776 Query 113944 GATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGC 114003 ||| || | ||| | ||||| |||||||| ||||| || | |||||| | ||| ||||| Sbjct 6775 GATGTTCGAGGTGAAAGGCTCGAAGCACTCGTTGTTGCCGAGGATTTGCGAGGTCGAGGC 6716 Query 114004 TGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGA----GACCCTTTTCCCTAATGCGTT 114059 |||||||| || || | || || ||| || | |||| | | | | | || Sbjct 6715 GGTGGGCATCGGCGCAAGCAGGAGAGAGTTGCGCATGCCGACC---TGCACCA---CCTT 6662 Query 114060 C--CTTGAGGGCGTCCCAGTCGTAGTTGA-GCTTTGTCTCCCC-----CTGCCACATATC 114111 | ||||||| |||||| || | | ||| | | | || |||||| || Sbjct 6661 CTGCTTGAGGCTGTCCCAATCCCACCGGCCGCTGTTCGGGCGCGGGTTCTTCCACATGTC 6602 Query 114112 AAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAAC 114171 ||||| ||||| || || ||| || |||| || |||||||| |||||||| | Sbjct 6601 GAACTGCAGGATGCCCTGACTGGCCGGGCTGCCCTTGAAGGTCTCGTAGGGGCCCTCCTC 6542 Query 114172 CTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGC 114231 || ||||| || || ||| | ||| ||| || || || || || || || Sbjct 6541 CTTCGCCAGCTCCATCGACGACTCCACGGCAGCGAAGTAGATCGTTTCGAAGATCTCCGC 6482 Query 114232 ATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGC 114291 |||| || ||||| | | || | || || || || || | ||||| Sbjct 6481 GTTCACGCGCTGCGCCTCAGGGCTGGCGAAGGGCAGGCGCAGCAGGATGAAGGCGTCCGC 6422 Query 114292 GAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGA--GCGGTC 114349 || ||||| || || ||||| | ||||| | | ||| || || | |||||| Sbjct 6421 CAGGCCTTGCACGCCCAGGCCGACCGGGCGGTTGCGCATGTTG--CTGCGGTACGCGGTC 6364 Query 114350 TCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTG 114409 ||||| || || | || | || || || | || || || |||| ||| || Sbjct 6363 TCCACCGGGTAGTAGTTGCGGTCAATGACGCGGTTCAGGTTGCGCGTGATCTGCTTCGTC 6304 Query 114410 ATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGG 114469 | | ||| | || ||| | ||| |||| ||||| || | || ||| Sbjct 6303 ACGCTGTACAGCAGCTGGTGATCGATCTCGCGCTTCTCCTCATTCACGAAGCGCGGCAGG 6244 Query 114470 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 114529 ||||| || || || || ||||| | |||||| ||| |||||||| | ||| || Sbjct 6243 GCGATGGAGGCGAGGTTGCACACCGCGGTCTCCTCCGGCGACGTGTACTCCACAATCTCG 6184 Query 114530 GTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 114589 || || | || || | ||| |||||||| | |||||| || || ||||| |||| ||| Sbjct 6183 GTGCAGAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCTGTTGCAC 6124 Query 114590 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 114649 || |||||||| || ||| | || || ||||| | || |||| |||||| || | Sbjct 6123 GCGTCCTTGTAGAGGATGAACGGGACGCCGGTCTCGATCTGCGACTCGAGAATCGCAAAC 6064 Query 114650 CAGACATCG-GCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTA 114708 || || || | | |||| | || | | || |||||| ||||||| || Sbjct 6063 CACACCTCCTGTGCCTGGATCGTCTGCACTC-CGCGGCCCTCCGCCTCGTAGCGCTCATA 6005 Query 114709 GAGGGCTTCAAACTCTTCACCCACG--GCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAG 114766 ||| || ||||| || || | | | ||||| |||| || | | | |||| Sbjct 6004 CAGGCGCTCGAACTCCTCGCCGTAGCAGTCGCTGAG-GCCCGGGCACGTGCT-TGGGTCC 5947 Query 114767 AAGAGAGACCA-TTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAG 114825 | || | ||| || || | ||| ||| | ||||||||||| ||||| |||||||| || Sbjct 5946 ATCAGCGTCCACTTCCCCTCACTCTTCA-CGCGCTTCATGAACAGGTCGGGGATCCACAG 5888 Query 114826 AGCTGAGAAGAGATCCCGACAGCGAGCT--TCTTCATCCCCCTGATTGAGACGCAACTCC 114883 || ||||||| || || || ||| || || | || ||| | || | | Sbjct 5887 CGCGTAGAAGAGGTCGCGC--GCACGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCAGC 5830 Query 114884 AAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG- 114942 | ||| | | ||| || ||||||||||| || ||||| | |||| | ||||| || Sbjct 5829 AGGAAGCCGAAGATGTCGGCGTGCCACGGCTCGAGGTAAATGGCGAAGGCGCCCTTGCGC 5770 Query 114943 --ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATG 115000 || || |||||| || || | || ||| || || ||||| ||||| || | Sbjct 5769 TTACCGCCGCCCTGGTCCACGTAGCGGGCCGTGTTGTTGAACACGCGCAGCATCGGCACC 5710 Query 115001 ATACCATCAGATTGGCCATTTGTCCCC-CGAA-TACGAGACTTATTGGCTCTGACATCAT 115058 | || | || ||| || || || ||| || | | || | || | | Sbjct 5709 AGGCCGTTCGACGTGCCGTTCGTGCCAGCGATGTAGCTGCCGGC--GGAGCGGATGTTGT 5652 Query 115059 GGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGC 115118 | | ||||| || || || || ||| ||| ||| ||||||||| | || || Sbjct 5651 GCACGTGCAGGCCGATGCCGCCGGCCGCCTTGCTGATGACGGCGCACTCCTTCAGCGTGT 5592 Query 115119 CGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGA---CATTT 115175 |||| |||||||| || ||| |||| |||| |||||||| ||| ||| | Sbjct 5591 CGTAAATCCCGTCAATGCTGTCGTCCTTCGACGCGACGAGGAAGCA---CGAGCTCATCT 5535 Query 115176 GTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGG 115235 | ||| ||||||| || |||||||||||||| || || ||||| |||| | || | | Sbjct 5534 GCGGCTTTGGTGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAAAAGCCCTTCG 5475 Query 115236 ACATCTTATCGTAGGTCTC 115254 ||||| |||||| ||||| Sbjct 5474 ACATCAGATCGTACGTCTC 5456 >seq8796 Length=7791 Score = 125 bits (138), Expect = 9e-24 Identities = 349/528 (66%), Gaps = 12/528 (2%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || |||||| ||||||||||||||| ||||| || | || ||| ||||||| Sbjct 7758 GTACTCGCCAACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCAT 7699 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACG 125877 || || || || | | | ||| | | || ||| | | || || || Sbjct 7698 GAAGTCGAAGGGCTGCGTCACGTTGTAGTGCTTCTCCAGCCCCAGCGACACCAGCAGCCG 7639 Query 125878 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 125937 |||| ||| |||| ||||||| |||||| ||| | |||||| ||||| || Sbjct 7638 GTCCGCAACGAACTCGATGTACTGCGACATCAGCTCCGCGTTCATGCCGATCAGCCGCAC 7579 Query 125938 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGTG 125997 || |||||||| |||||||| | ||| || | ||| || ||| | ||| | | Sbjct 7578 CGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCCACGATGATCTCCAG 7519 Query 125998 AATGGTGTC-CACCCCAGGTCTATTGCGCAAAGTC----TTGAAGAGTTC-CACGGCAAA 126051 | | || | | ||| || ||| | || ||| | || |||| | || Sbjct 7518 CACGCGCTCGCGCGGCAG--CTTGTGCTTGATGTGCGAGTTGTACAGCAGGCACG-CGAA 7462 Query 126052 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCAT 126111 || ||| || |||||||| || ||||| || || || ||| ||| || ||||| Sbjct 7461 GTCCGTGTGCAGCCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCAGGCAT 7402 Query 126112 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTC 126171 || || |||||||||| |||||| | ||| || || || |||||||||||||| ||||| Sbjct 7401 CAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCCGAGAAGAAGATGCCCTC 7342 Query 126172 CACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTT 126231 ||| ||||||| | | || ||||| || | |||| | | | | |||| Sbjct 7341 CACCGCCGCGAACCCGATCAGCCGCTCCTGGAA-GCTCGCGCC--GCTCCCGATCCACCG 7285 Query 126232 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 || ||||||| |||||| |||| ||| ||||||| ||||||||||| Sbjct 7284 CACAGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 7237 >seq6209 Length=3470 Score = 125 bits (138), Expect = 9e-24 Identities = 349/528 (66%), Gaps = 12/528 (2%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || |||||| ||||||||||||||| ||||| || | || ||| ||||||| Sbjct 656 GTACTCGCCAACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCAT 597 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACG 125877 || || || || | | | ||| | | || ||| | | || || || Sbjct 596 GAAGTCGAAGGGCTGCGTCACGTTGTAGTGCTTCTCCAGCCCCAGCGACACCAGCAGCCG 537 Query 125878 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 125937 |||| ||| |||| ||||||| |||||| ||| | |||||| ||||| || Sbjct 536 GTCCGCAACGAACTCGATGTACTGCGACATCAGCTCCGCGTTCATGCCGATCAGCCGCAC 477 Query 125938 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGTG 125997 || |||||||| |||||||| | ||| || | ||| || ||| | ||| | | Sbjct 476 CGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCCACGATGATCTCCAG 417 Query 125998 AATGGTGTC-CACCCCAGGTCTATTGCGCAAAGTC----TTGAAGAGTTC-CACGGCAAA 126051 | | || | | ||| || ||| | || ||| | || |||| | || Sbjct 416 CACGCGCTCGCGCGGCAG--CTTGTGCTTGATGTGCGAGTTGTACAGCAGGCACG-CGAA 360 Query 126052 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCAT 126111 || ||| || |||||||| || ||||| || || || ||| ||| || ||||| Sbjct 359 GTCCGTGTGCAGCCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCAGGCAT 300 Query 126112 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTC 126171 || || |||||||||| |||||| | ||| || || || |||||||||||||| ||||| Sbjct 299 CAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCCGAGAAGAAGATGCCCTC 240 Query 126172 CACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTT 126231 ||| ||||||| | | || ||||| || | |||| | | | | |||| Sbjct 239 CACCGCCGCGAACCCGATCAGCCGCTCCTGGAA-GCTCGCGCC--GCTCCCGATCCACCG 183 Query 126232 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 || ||||||| |||||| |||| ||| ||||||| ||||||||||| Sbjct 182 CACAGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597241349791640