Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq9113 381 6e-101 seq8796 174 2e-38 seq6209 174 2e-38 seq6451 96.9 3e-15 seq3668 89.7 5e-13 >seq9113 Length=16536 Score = 381 bits (422), Expect = 6e-101 Identities = 994/1478 (67%), Gaps = 51/1478 (3%) Strand=Plus/Minus Query 153003 TTAATGAGGTC-ATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCG 153061 ||||||||||| ||| | | ||||| ||| ||||| | |||||||| || ||| || Sbjct 6843 TTAATGAGGTCCATC-ACGAGGTACTTGTTCACCACCGGGAACTCGCCGCTCAGCACGCG 6785 Query 153062 TCTCAAATATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGC 153121 | | ||| | || |||||||| || ||| | ||||| ||||| || ||||| | Sbjct 6784 ACGAACATAGATGTTCGAGGTGAAAGGCTCGAAGCACTCGTTGTTGCCGAGGATTTGCGA 6725 Query 153122 CGTGGTTGCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGC-GCTCGAA 153180 || | ||||| ||||| ||| | || | ||| || |||| |||| | || | | Sbjct 6724 GGTCGAGGCGGTGGGCATCGGCGCAAGCAGGAGAGAGTTGCGCATGCCGACCTGCACCAC 6665 Query 153181 TGTCGTCCTTCAACGCCTG--CCAATCCCACAGCGCCGACGGT--GTCGCG-----TTCC 153231 || | ||| | | ||| |||||||||| | |||| | | | |||| |||| Sbjct 6664 CTTC-TGCTTGA--GGCTGTCCCAATCCCACCG-GCCGCTGTTCGGGCGCGGGTTCTTCC 6609 Query 153232 ACATGTCGTACTGTAACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGC 153291 |||||||| |||| | | || ||||||| || ||||| || || |||| || Sbjct 6608 ACATGTCGAACTGCAGGATGCCCTGACTGGCCGGGCTGCCCTTGAAGGTCTCGTAGGGGC 6549 Query 153292 CGTCGCGTTGGGCCAGTTCGCAGCTA-GCCTCGAGCGCGCCATAGTATATGGTTTCGGCG 153350 | || | ||||| || || | | | ||| | || | |||| || |||||| | Sbjct 6548 CCTCCTCCTTCGCCAGCTC-CATCGACGACTCCACGGCAGCGAAGTAGATCGTTTCGAAG 6490 Query 153351 ATTTGTTTATTGA-GAACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAA 153409 || | || | | | || || || ||| || | |||| ||||||||| | || Sbjct 6489 ATCTCCGCGTTCACGCGCTGC-GCCTCAGGGCTGGCGAAGGGCAGGCGCAGCAGGATGAA 6431 Query 153410 GGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCT 153469 |||||| ||||| || || | || | ||||| || || | | ||||||||| Sbjct 6430 GGCGTCCGCCAGGCCTTGCACGCCCAGGCCGACCGGGCGGTTGCGCATGTTGCTGCGGTA 6371 Query 153470 CGCGCTCGCTATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCAC 153529 |||| || | | || |||| ||||| || || | ||| ||||||||| | | Sbjct 6370 CGCGGTCTCCACCGGGTAGTAGTTGCGGTCAATGACGCGGTTCAGGTTGCGCGTGATCTG 6311 Query 153530 TTTAGTTATCGCCTTA-AGTTTCTCGAAATC-ATAGGTCATTTCGTCGACGCGTACGCAT 153587 || || | ||| || || || | ||| || | ||| || | ||| | Sbjct 6310 CTTCGTCA-CGCTGTACAGCAGCTGGTGATCGATCTCGCGCTTC-TCCTCATTCACGAAG 6253 Query 153588 CGATTCACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTACTG 153646 || || ||| || || || || || || || || ||||| || |||| || |||||| Sbjct 6252 CGCGGCAGGGCGATGGAGGCGAGGTTGCACACCGCGGTCTCCTCCGGCGACG-TGTACTC 6194 Query 153647 CACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTT 153706 ||| ||||||| ||||||||| ||| || ||| ||| | || | ||| || || Sbjct 6193 CACAATCTCGGTGCAGAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTCGACTT 6134 Query 153707 GCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGAC 153766 || ||||||||||| ||| |||| ||| |||| |||||||||||| |||| |||| Sbjct 6133 GCTGTTGCACGCGTCCTTGTAGAGGATGAACGGGACGCCGGTCTCGATCTGCGACTCGAG 6074 Query 153767 GAT---AAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTC 153823 || ||||| || ||||| || | | | |||| ||||||||| ||| Sbjct 6073 AATCGCAAACCA---CACCTCCTGTGCCTGGATCGTCTGCACTCCGCGGCCCTCCGCCTC 6017 Query 153824 GTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACAC-T 153882 ||| ||||| ||||| ||||| ||||| ||||||||||||||| |||||| || ||| | Sbjct 6016 GTAGCGCTCATACAGGCGCTCGAACTCCTCGCCGTAGCAGTCGCTGAGGCCCGGGCACGT 5957 Query 153883 GATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCG 153942 | | || | |||||||| |||| | | || || ||||| ||||||||| || | Sbjct 5956 GCTTGGGTC-CATCAGCGTCCACTTCCCCTCACTCTTCACGCGCTTCATGAACAGGTCGG 5898 Query 153943 GCACCCAGAGCGCGTACATGAGGTCGCGCGC---CTTGCAATCCTCCGCGCCCATGTTGC 153999 | | ||| |||||||| | |||||||||||| || | || ||| ||| |||||| Sbjct 5897 GGATCCACAGCGCGTAGAAGAGGTCGCGCGCACGCTGG---TCGTCCTTGCCGGTGTTGC 5841 Query 154000 GTTTCAGATTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGG 154059 | ||||| || | || |||||||||||||||| || || | ||| | ||| | || Sbjct 5840 GCTTCAGCAGCAGGAAGCCGAAGATGTCGGCGTGCCACGGCTCGAGGTAAATGGCGAAGG 5781 Query 154060 CACCTTTACGCTT---TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCA 154116 | || || ||||| |||||||| || |||| ||| || | |||||||| ||||||| Sbjct 5780 CGCCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCCGTGTTGTTGAACACGCGCA 5721 Query 154117 CCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGC 154176 ||| || |||||||| | | |||||||| || | ||| | ||||||| || || Sbjct 5720 GCATCGGCACCAGGCCGTTCGACGTGCCGTTCGTGCCAGCGATGTAGCTGCCGGCGGAGC 5661 Query 154177 GCACTTGATGCACGTTAACGCCAATGCCGCC-GCCGTACTTTGAT-ATGGCAGCGCAGTC 154234 | | | ||||||| | ||| |||||||| |||| | ||| | ||| | ||||| || Sbjct 5660 GGATGTTGTGCACGTGCAGGCCGATGCCGCCGGCCG--CCTTGCTGATGACGGCGCACTC 5603 Query 154235 GCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGT-CGCGGACGCCGAGCAAGAAACACG 154293 |||||| ||| || ||||| ||||| |||| | |||| ||| | ||| |||| Sbjct 5602 CTTCAGCGTGTCGTAAATCCCGTCAATGCTGTCGTCCTTCGACG-CGACGAGGAAGCACG 5544 Query 154294 AACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGT-AAAC 154352 | | ||| ||||| | | || || || |||||||| || | |||||||| ||| Sbjct 5543 AGCTCATCTGCGGCTTTGGTGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAAA 5484 Query 154353 AGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATG 154412 || || | ||||| |||||| || ||| | || || || |||| ||| Sbjct 5483 AGCCCTTCG-ACATCAGATCGTACGTCTCACGCACGTTCTTGAGGTCGCCGACGTGGATG 5425 Query 154413 CCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTC 154450 ||||| || ||||||| || | |||||||| ||||| Sbjct 5424 CCGAGGGCAACGCGCAGGAAGAGCTGCTGCGGGCGTTC 5387 >seq8796 Length=7791 Score = 174 bits (192), Expect = 2e-38 Identities = 368/538 (68%), Gaps = 11/538 (2%) Strand=Plus/Plus Query 52304 GCTGCTGAATGCGTTCGAGCACG-TGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGA 52362 ||||||| | ||| || || ||| | |||||| | | || ||||| ||||||| || Sbjct 7227 GCTGCTGCACGCGATCCAG-ACGATCCCGTGCATCCAGAAGAAGGCGGAGTGGGCTGTGC 7285 Query 52363 AGTGGATCGAGAGCGACACCGCCACGCTGGCCG-AGCGCATGGTGGCCTTCGCCATAGTC 52421 |||||||| ||||| | || | ||| | | |||| || | | ||||| || Sbjct 7286 GGTGGATCGGGAGCGGC---GCGA-GCTTCCAGGAGCGGCTGATCGGGTTCGCGGCGGTG 7341 Query 52422 GAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATA 52481 |||||| | || || || || || ||| | || | | || | | || | Sbjct 7342 GAGGGCATCTTCTTCTCGGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGGCTG 7401 Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 ||||| || |||||||||||||||||| |||| ||||||||||| || |||||||||||| Sbjct 7402 ATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGGCTGCACACGGAC 7461 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA-CACGATCCT 52600 || |||||||| ||||| ||| | | | | || || || | || | Sbjct 7462 TTCGCGTGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTG 7521 Query 52601 GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGT 52660 ||| || || ||| |||||| ||||| ||||| | | |||||||||||| Sbjct 7522 GAG-ATCATCGTGGACGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGT 7580 Query 52661 CGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCG 52720 |||| | |||||||||||| || |||| ||||||||||||| || ||||| || Sbjct 7581 GCGGCTGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTTGCGGACCG 7640 Query 52721 TCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACG-CTCGCAATCCGTTTGAGTTTA 52779 ||| ||||| ||| |||| | ||| ||| ||||| ||| | || || || || | Sbjct 7641 GCTGCTGGTGTCGCTGGGGCTGGAGAAGCACTACAACGTGACGC-AGCCCTTCGACTTCA 7699 Query 52780 TGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || | | || ||||| |||||||||| ||||| ||||||||| || |||||||| Sbjct 7700 TGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTTGGCGAGTA 7757 >seq6209 Length=3470 Score = 174 bits (192), Expect = 2e-38 Identities = 368/538 (68%), Gaps = 11/538 (2%) Strand=Plus/Plus Query 52304 GCTGCTGAATGCGTTCGAGCACG-TGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGA 52362 ||||||| | ||| || || ||| | |||||| | | || ||||| ||||||| || Sbjct 125 GCTGCTGCACGCGATCCAG-ACGATCCCGTGCATCCAGAAGAAGGCGGAGTGGGCTGTGC 183 Query 52363 AGTGGATCGAGAGCGACACCGCCACGCTGGCCG-AGCGCATGGTGGCCTTCGCCATAGTC 52421 |||||||| ||||| | || | ||| | | |||| || | | ||||| || Sbjct 184 GGTGGATCGGGAGCGGC---GCGA-GCTTCCAGGAGCGGCTGATCGGGTTCGCGGCGGTG 239 Query 52422 GAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATA 52481 |||||| | || || || || || ||| | || | | || | | || | Sbjct 240 GAGGGCATCTTCTTCTCGGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGGCTG 299 Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 ||||| || |||||||||||||||||| |||| ||||||||||| || |||||||||||| Sbjct 300 ATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGGCTGCACACGGAC 359 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA-CACGATCCT 52600 || |||||||| ||||| ||| | | | | || || || | || | Sbjct 360 TTCGCGTGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTG 419 Query 52601 GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGT 52660 ||| || || ||| |||||| ||||| ||||| | | |||||||||||| Sbjct 420 GAG-ATCATCGTGGACGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGT 478 Query 52661 CGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCG 52720 |||| | |||||||||||| || |||| ||||||||||||| || ||||| || Sbjct 479 GCGGCTGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTTGCGGACCG 538 Query 52721 TCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACG-CTCGCAATCCGTTTGAGTTTA 52779 ||| ||||| ||| |||| | ||| ||| ||||| ||| | || || || || | Sbjct 539 GCTGCTGGTGTCGCTGGGGCTGGAGAAGCACTACAACGTGACGC-AGCCCTTCGACTTCA 597 Query 52780 TGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || | | || ||||| |||||||||| ||||| ||||||||| || |||||||| Sbjct 598 TGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTTGGCGAGTA 655 >seq6451 Length=1481 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || || || || || || |||| | Sbjct 24 GACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCTTCCAGCTGCTTGCCGGCA 83 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| || ||||| |||||||| || || || || ||||| ||| | || | || | Sbjct 84 AAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTC-CTGAATCTTCGCCTTCAC 142 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||||||| ||| ||| ||||||| | | ||| ||||| ||||| || || Sbjct 143 GTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCGTCTTACCGGTCAGGGTCTT 202 Query 138600 TACAAAAATCTGCATGG 138616 ||||| |||||||||| Sbjct 203 CACAAAGATCTGCATGG 219 >seq3668 Length=3103 Score = 89.7 bits (98), Expect = 5e-13 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || ||||| || || || |||| Sbjct 194 GACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCG 253 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| || ||||| |||||||| || || || || ||||| ||| | || | || | Sbjct 254 AAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTC-CTGAATCTTCGCCTTCAC 312 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||||||| ||| ||| ||||||| | | ||| ||||| ||||| || || Sbjct 313 GTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCGTCTTACCGGTCAGGGTCTT 372 Query 138600 TACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 373 CACGAAGATCTGCATG 388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496169146091760