Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq9113 138 1e-27 seq3668 123 2e-23 SEQ14990 118 1e-21 seq6451 116 4e-21 seq5330 86.0 6e-12 >seq9113 Length=16536 Score = 138 bits (152), Expect = 1e-27 Identities = 576/882 (65%), Gaps = 49/882 (6%) Strand=Plus/Minus Query 146634 GGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTT-GTCGCAATACTGCACAATCT 146692 |||||| ||||| | ||| || || || ||||| ||| | || |||| |||||||| Sbjct 6244 GGCGATGGAGGCGAGGTTGCACACCGCGGTCTCCTCCGGCGACGTG-TACTCCACAATCT 6186 Query 146693 CGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTT--ACTAAACTTGTT 146750 ||| ||||||||| |||||||||| |||| | || || ||||| ||| |||| Sbjct 6185 CGGTGCAGAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTCGACT--TGCTGTT 6128 Query 146751 GCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATGAA 146810 ||| | |||||||||||| ||| |||| | ||||| |||| | | ||||| ||| Sbjct 6127 GCACGCGTCCTTGTAGAGGATGAACGGGACGCCGGTCTCGATCTGCGACTCGA----GAA 6072 Query 146811 T--CTAAACAAATCT-CTG-GCCTTTACTTGTCTTTCGTAC-AGTTTATTCTTTTCGTAT 146865 | | || || | || ||| |||| | | |||| | | | | | ||||| Sbjct 6071 TCGCAAACCACACCTCCTGTGCCTGGA-TCGTCTGCACTCCGCGGCCCTCCGCCTCGTAG 6013 Query 146866 TTCTCGTACAATATTTCAAA--ACTAGAACCGTACTCGTCGAGGAGGCCGGGATAC-TTT 146922 ||| |||| || || || | ||||| |||| |||||| || || | Sbjct 6012 CGCTCATACAGGCGCTCGAACTCCTCG--CCGTAGCAGTCGCTGAGGCCCGGGCACGTGC 5955 Query 146923 TTGGGACAGAACAGCGACCA-TTCTTTATTCTCCTTCACGCGTTCCATAAACAAATCGGG 146981 ||||| | | ||||| ||| ||| || ||||||||| | ||| |||| ||||| Sbjct 5954 TTGGGTC-CATCAGCGTCCACTTCCCCTCACT-CTTCACGCGCTTCATGAACAGGTCGGG 5897 Query 146982 AATCCAAAG-GCCCAGCATCAAGTCGCGAGC---CTTGGCGTCCTCGGAGCCCATGTTGC 147037 ||||| || || || | | |||||| || || | |||||| ||| |||||| Sbjct 5896 GATCCACAGCGCGTAG-AAGAGGTCGCGCGCACGCTGGTCGTCCT---TGCCGGTGTTGC 5841 Query 147038 GTCTCAAGTTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGTG 147097 | ||| |||| || | || || | ||||| ||||| | ||| ||||| | Sbjct 5840 GCTTCAGCAGCAGGAAGCCGAAGATGTCGGCGTGCCACGGCTCGAGGTAAATGGCGAAGG 5781 Query 147098 CGCCTTTTCGCTTA---CCGCCCTGATCGACGTGGCGCACCATGTTATTGAAGACTCGTA 147154 |||| || |||||| |||||||| || |||| ||| || |||| ||||| || || | Sbjct 5780 CGCCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCCGTGTTGTTGAACACGCGCA 5721 Query 147155 ACATGGACACGAGGCCGCCGGA------TTTTGTGGTGCCGTTGTA-TTG-----AGCGC 147202 ||| | ||| |||||| || || ||| || |||| || | || Sbjct 5720 GCATCGGCACCAGGCCGTTCGACGTGCCGTTCGTGCCAGCGATGTAGCTGCCGGCGGAGC 5661 Query 147203 TGACGCTTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGCGGACTCGT 147262 || | | |||||| ||| |||| || ||| || || || | ||| |||| | Sbjct 5660 GGATGTTGTGCACGTGCAGGCCGATGCCGCCGGCCGCCTTGCTGATGACGGCGCACTCCT 5601 Query 147263 GCAAGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTT-GATGCATTGCAGGAAACACGAA 147321 || || | ||| || ||||| |||||||| ||||| || || | ||||| ||||| Sbjct 5600 TCAGCGTGTCGTAAATCCCGTCAATGCTGTCGTCCTTCGACGCGACG-AGGAAGCACGAG 5542 Query 147322 CACATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGTG 147381 | ||| || || ||||| || || || || ||| ||||||||||||| | Sbjct 5541 CTCATCTGCGGCTTTGGTGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAAAAG 5482 Query 147382 CCCAGACTCATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATGGCC 147441 ||| ||||| | ||||| ||| || || | | ||| || |||| ||| | Sbjct 5481 CCCTTCGACATCAGATCGTACGTCTCACGCACGTTCTTGAGGTCGCCGACGTGGATGCCG 5422 Query 147442 AGGGCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAATC 147483 ||||| ||||||| || | ||||| || |||||| ||||| Sbjct 5421 AGGGCAACGCGCAGGAAGAGCTGCTGCGGGCGTTCCACAATC 5380 >seq3668 Length=3103 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||| | || | ||| ||||| || || || ||||| || | Sbjct 161 CCACCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 220 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 221 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 280 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| || ||| ||| | | |||| |||||| | |||||| Sbjct 281 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACC 340 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| || | ||| || |||||||| || || || || ||||||||| Sbjct 341 TCGAGGGCGATCGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCATG 388 >SEQ14990 Length=15354 Score = 118 bits (130), Expect = 1e-21 Identities = 174/247 (70%), Gaps = 5/247 (2%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||| | || | ||| ||||| || || || ||||| || | Sbjct 9180 CCACCGCGCAGGCGCAGCACNAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 9121 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || |||||| |||||| |||||||| || || || Sbjct 9120 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 9061 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| || ||| ||| | | |||| ||||| | |||||| Sbjct 9060 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCGACC 9001 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATTTATTC 127126 || | | | || ||||||||||| || || || || ||||||||| ||||| Sbjct 9000 TCCAGCGCAATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG-----ATTATTG 8946 Query 127127 CTTTCCT 127133 ||||||| Sbjct 8945 CTTTCCT 8939 >seq6451 Length=1481 Score = 116 bits (128), Expect = 4e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | || | ||| ||||| || || || ||||| || | | |||||| Sbjct 3 CGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 62 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||||| |||||||| || || || |||||||||||| Sbjct 63 TCTTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 122 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| || ||| ||| | | |||| |||||| | |||||| |||| || | | Sbjct 123 TCCTGAATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATC 182 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 || || |||||||| || || ||||| |||||||||| Sbjct 183 GTCTTACCGGTCAGGGTCTTCACAAAGATCTGCATGG 219 >seq5330 Length=12009 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||| | || | ||| ||||| || || || ||||| || | Sbjct 154 CCACCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 95 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 94 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 35 Query 127007 ATGCCCTCCTTGTCC 127021 ||||||||||||||| Sbjct 34 ATGCCCTCCTTGTCC 20 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475411447455920