Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq9113 127 2e-24 seq3668 89.7 5e-13 SEQ14990 87.8 2e-12 seq6451 82.4 7e-11 >seq9113 Length=16536 Score = 127 bits (140), Expect = 2e-24 Identities = 516/803 (64%), Gaps = 19/803 (2%) Strand=Plus/Plus Query 122926 TCATGCGCGTCGCTATAGGCGTGCACGGACGCGACATCGAAAACGCGACCGAAACTTACG 122985 || ||||||| || | ||| | |||| ||||| || | |||| | || || |||| Sbjct 5406 TCCTGCGCGTTGCCCTCGGCATCCACGTCGGCGACCTCAAGAACGTGCGTGAGACGTACG 5465 Query 122986 ATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCGCCGCCGGCACGA 123045 || ||||||| | |||||||||||||| | || || | ||| ||||||||| Sbjct 5466 ATCTGATGTCGAAGGGCTTTTTCACGCACGCCACCCCGACCCTCTTCAACGCCGGCACAC 5525 Query 123046 AGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTTGCGCGAAGACAGCATCACCGGTA 123105 ||| ||| || ||||| || | || | | | || |||||||| ||| | Sbjct 5526 CAAAGCCGCAGATGAGCTCGTGCTTCCTCGTCGCGTCGAAGGACGACAGCATTGACGGGA 5585 Query 123106 TCTATGAAACTTTGCGCGATTGCGCGTTGATTTCCAAATTTGGCGGCGGCATAGGCGTGA 123165 | || || || || || ||||| | || ||| | ||||||||| ||| || Sbjct 5586 TTTACGACACGCTGAAGGAGTGCGCCGTCATCAGCAAGGCGGCCGGCGGCATCGGCCTGC 5645 Query 123166 ACGTGCACGACGTAAGAGGCCGCGGAAGCCGCATCAGAAGCACCGACGGAATCGCCTCCG 123225 |||||||| || | | | ||| ||| |||| |||| |||| | | || Sbjct 5646 ACGTGCACAACATCCGCTCCGCCGGCAGCTACATCGCTGGCACGAACGGCACGTCGAACG 5705 Query 123226 GGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGC- 123284 | || | | |||||||| || | ||| ||| | | || |||| |||||||||||| Sbjct 5706 GCCTGGTGCCGATGCTGCGCGTGTTCAACAACACGGCCCGCTACGTGGACCAGGGCGGCG 5765 Query 123285 --AAACGCAAAGGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATT 123342 || ||||| ||||| | || || || || || |||||||||| || | | || | Sbjct 5766 GTAAGCGCAAGGGCGCCTTCGCCATTTACCTCGAGCCGTGGCACGCCGACATCTTCGGCT 5825 Query 123343 TTTTAAATTTAAAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACG 123402 | | | || ||||||| || ||| || || || ||||| | || |||| Sbjct 5826 TCCTGCTGCTGAAGCGCAACACCGGCAAGGACGACCAGCGTGCGCGCGACCTCTTCTACG 5885 Query 123403 CTTTATGGGTACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCA 123462 | | ||| | ||||| |||| ||| ||||| || || || |||| |||| | Sbjct 5886 CGCTGTGGATCCCCGACCTGTTCATGAAGCGCGTGAAGAGTGAGGGGAAGTGGACGCTGA 5945 Query 123463 TGTGTCCCGATC-GGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTG 123521 || | ||| | | ||| || ||| | |||||| |||||| | |||| || || Sbjct 5946 TG-GACCCAAGCACGTGCCCGGGCCTCAGCGACTGCTACGGCGAGGAGTTCGAGCGCCTG 6004 Query 123522 TACGCGCAATACGAGCGCGAAGGCAAACAGGTTAGT-CAG--GTTCC-GGCACGTGATTT 123577 || | || |||||| ||| ||| | | ||| ||| | ||| ||||| || | Sbjct 6005 TATGAGCGCTACGAG-GCGGAGG---GCCGCGGAGTGCAGACGATCCAGGCACAGGAGGT 6060 Query 123578 GTTCAAATTT---ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAA 123634 || ||| ||| |||| | || |||| ||||| |||| ||| |||||||| Sbjct 6061 GT---GGTTTGCGATTCTCGAGTCGCAGATCGAGACCGGCGTCCCGTTCATCCTCTACAA 6117 Query 123635 AGACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCT 123694 ||||| |||||||| || | || |||| ||| | || || || || || || || Sbjct 6118 GGACGCGTGCAACAGCAAGTCGAACCAGAAGAACCTCGGCACCATCAAGTGCTCGAACCT 6177 Query 123695 TTGCTCCGAAATTATCGAATACA 123717 ||| |||| ||| | || |||| Sbjct 6178 CTGCACCGAGATTGTGGAGTACA 6200 >seq3668 Length=3103 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | || ||| || |||||||| || ||||| ||||| || || || Sbjct 158 ATGCCACCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCC 217 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || || |||| || || || ||| | |||| || |||||||||||| Sbjct 218 GCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGC 277 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || ||||| || || | || | || | ||||||| | ||| Sbjct 278 GGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCA-CGTTCTCGATGGTGTCGCTCGCCTC 336 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| | | ||| || ||||| || || || || || || ||||| Sbjct 337 GACCTCGAGGGCGATCGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 387 >SEQ14990 Length=15354 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 45108 TTTATT--CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTAT 45165 |||||| || ||||| || | || ||| || |||||||| || ||||| ||||| || | Sbjct 9188 TTTATTGGCCACCGCGCAGGCGCAGCACNAGGTGCAGCGTCGACTCCTTCTGGATGTTGT 9129 Query 45166 AATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGT 45225 | || || || || |||| || || || ||| | |||| || ||||||| Sbjct 9128 AGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGT 9069 Query 45226 CCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAA 45284 ||||||| ||||| || || || ||||| || || | || | || | |||||| Sbjct 9068 CCGGCGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCA-CGTTCTCGATCGTGTCGCTG 9010 Query 45285 GACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | |||||| || || | || || |||||||| || || || || || || ||||| Sbjct 9009 GCCTCGACCTCCAGCGCAATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 8954 >seq6451 Length=1481 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 || ||| || |||||||| || ||||| ||||| || || || || || || Sbjct 5 CAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTC 64 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 |||| || || || || | |||| || |||||||||||||| ||||| || || || Sbjct 65 TTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTC 124 Query 45248 TTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306 ||||| || || | || | || | ||||||| | |||||| ||||| | | || Sbjct 125 CTGAATCTTCGCCTTCA-CGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCG 183 Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || ||||| || || || ||||| || ||||| Sbjct 184 TCTTACCGGTCAGGGTCTTCACAAAGATCTGCAT 217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451918262948680