Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq9113 192 7e-44 seq8796 109 7e-19 seq6209 109 7e-19 >seq9113 Length=16536 Score = 192 bits (212), Expect = 7e-44 Identities = 1077/1695 (64%), Gaps = 47/1695 (3%) Strand=Plus/Minus Query 115549 GCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGC 115608 ||||| | || |||||||||| |||||||| || ||| || ||| | || | || Sbjct 7131 GCCTTCGTGCGCAGGTAGTACACACCCGTCTTCAGACCCGACTCCCACGTGTAGAAGAGC 7072 Query 115609 ATTGAGGACAACTTGGA-GAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTG 115667 || || | | || | ||| || || |||| || ||||||||||| ||||| || Sbjct 7071 ATCGACGTGATCTGGCCCGAG-GTGGGGCTTTGCAGGAAGAGGTTCAGCGACTGGGACTG 7013 Query 115668 ATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCA 115727 || ||| | | || || || ||||| || |||| | | | ||| ||||| Sbjct 7012 GTCAATGTACTGGCCGCGGTCGCGGGCCATGTCGATCAGCTTGCGCTGCGGGATCTCCCA 6953 Query 115728 CACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCC 115787 ||| || | ||| || | ||| | || || ||||| |||| | | | ||||| Sbjct 6952 CACCGTGCGGTACAGCTCCTTCAGGTCGTCCGGGATGCTGTCGATGGTCAGCACGGAGCC 6893 Query 115788 ACCTGCCTTGACCATGAGATCCTT-CATATCCTTTGA--CCAGAGACCAATCTTCTTGAG 115844 || | | |||| || || | ||| | | | ||| || || ||| |||| Sbjct 6892 GT-TG--TAGGAGATGATCTCGTTGCGCATCGTCTCATTCCACAGGCCGCGCTTAATGAG 6836 Query 115845 ATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATA 115904 ||| |||||||| ||| || || || ||||| || || ||| | | ||| Sbjct 6835 GTCCATCACGAGGTACTTGTTCACCACCGGGAACTCGCCGCTCAGCACGCGACGAACATA 6776 Query 115905 GATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGC 115964 |||||| | ||| | ||||| |||||||| ||||| || | |||||| | || ||||| Sbjct 6775 GATGTTCGAGGTGAAAGGCTCGAAGCACTCGTTGTTGCCGAGGATTTGCGAGGTCGAGGC 6716 Query 115965 TGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTC--C 116022 |||||||| || || | || || |||||| | || ||| | | | ||| | Sbjct 6715 GGTGGGCATCGGCGCAAGCAGGAGAGAGTTGCGCATGCCGACCTGCACCA--CCTTCTGC 6658 Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGA-GCTTTGTCTCCCC-----CTCCCACATATCAAAC 116076 |||||| |||||| || | | ||| | | | || |||||| || ||| Sbjct 6657 TTGAGGCTGTCCCAATCCCACCGGCCGCTGTTCGGGCGCGGGTTCTTCCACATGTCGAAC 6598 Query 116077 TGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC 116136 || ||||| || || || || |||| || ||||| || |||||||| ||| | Sbjct 6597 TGCAGGATGCCCTGACTGGCCGGGCTGCCCTTGAAGGTCTCGTAGGGGCCCTCCTCCTTC 6538 Query 116137 GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTC 116196 |||| || || ||| | ||| ||| || || || || || || || ||| Sbjct 6537 GCCAGCTCCATCGACGACTCCACGGCAGCGAAGTAGATCGTTTCGAAGATCTCCGCGTTC 6478 Query 116197 ATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGA 116256 | || ||||| | | || | || || || || || | ||||| || Sbjct 6477 ACGCGCTGCGCCTCAGGGCTGGCGAAGGGCAGGCGCAGCAGGATGAAGGCGTCCGCCAGG 6418 Query 116257 CCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGA--GCGGTCTCCA 116314 ||||| || || ||||| | ||||| | | ||| || || | |||||||||| Sbjct 6417 CCTTGCACGCCCAGGCCGACCGGGCGGTTGCGCATGTTG--CTGCGGTACGCGGTCTCCA 6360 Query 116315 CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTT 116374 | || || | || | || || || | || || || |||| ||| || | Sbjct 6359 CCGGGTAGTAGTTGCGGTCAATGACGCGGTTCAGGTTGCGCGTGATCTGCTTCGTCACGC 6300 Query 116375 CATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGA 116434 | ||| | || ||| | ||| |||| ||||| || | || ||||||| Sbjct 6299 TGTACAGCAGCTGGTGATCGATCTCGCGCTTCTCCTCATTCACGAAGCGCGGCAGGGCGA 6240 Query 116435 TTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTAC 116494 | || || || || ||||| | |||||| ||| |||||||| | ||| || || | Sbjct 6239 TGGAGGCGAGGTTGCACACCGCGGTCTCCTCCGGCGACGTGTACTCCACAATCTCGGTGC 6180 Query 116495 ACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCAT 116554 | | || || | ||| |||||||| | |||||| || || ||||| |||| ||||| | Sbjct 6179 AGAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCTGTTGCACGCGT 6120 Query 116555 CCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA 116614 |||||||||| || | || || ||||| | || |||| |||||| || ||| | Sbjct 6119 CCTTGTAGAGGATGAACGGGACGCCGGTCTCGATCTGCGACTCGAGAATCGCAAACCACA 6060 Query 116615 CAT-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGG 116673 | | | | | |||| | || | | || |||||| ||||||| || ||| Sbjct 6059 CCTCCTGTGCCTGGATCGTCTGCACT-CCGCGGCCCTCCGCCTCGTAGCGCTCATACAGG 6001 Query 116674 GCCTCAAACTCTTCACC--CACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGA 116731 ||| ||||| || || ||| | ||||| |||| || | | | ||| | | Sbjct 6000 CGCTCGAACTCCTCGCCGTAGCAGTCGCTGAG-GCCCGGGCACGTGCT-TGGGTCCATCA 5943 Query 116732 GAGACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCC 116790 | | ||| || || | ||| || || ||||||||||| ||||| |||||||| ||||| Sbjct 5942 GCGTCCACTTCCCCTCACTCTTC-ACGCGCTTCATGAACAGGTCGGGGATCCACAGCGCG 5884 Query 116791 GAGAAGAGATCCCGACAGCGAGCT--TCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 116848 ||||||| || || || ||| || || | || ||| | || | || | Sbjct 5883 TAGAAGAGGTCGCG--CGCACGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAGGA 5826 Query 116849 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---AC 116905 || | | ||| || ||||||||||| || ||||| | |||| | |||||||| || Sbjct 5825 AGCCGAAGATGTCGGCGTGCCACGGCTCGAGGTAAATGGCGAAGGCGCCCTTGCGCTTAC 5766 Query 116906 GACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATAC 116965 || |||||| || || | ||||| ||| || ||||| ||||| || | | | Sbjct 5765 CGCCGCCCTGGTCCACGTAGCGGGCCGTGTTGTTGAACACGCGCAGCATCGGCACCAGGC 5706 Query 116966 CATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTGGAT 117023 | | || ||| || || || ||| || | | | || | || | ||| | Sbjct 5705 CGTTCGACGTGCCGTTCGTGCCAGCGATGTAGCTGCC--GGCGGAGCGGATGTTGTGCAC 5648 Query 117024 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTA 117083 ||||| || || || || ||| ||| ||| ||||||||| | || || |||| Sbjct 5647 GTGCAGGCCGATGCCGCCGGCCGCCTTGCTGATGACGGCGCACTCCTTCAGCGTGTCGTA 5588 Query 117084 GATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC---AGCTCGACATTTGTGG 117140 ||||| || || ||| |||| |||| |||||||| |||| ||| || || Sbjct 5587 AATCCCGTCAATGCTGTCGTCCTTCGACGCGACGAGGAAGCACGAGCT---CATCTGCGG 5531 Query 117141 CCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACAT 117200 | ||||||| || |||||||||||||| || || ||||| |||| | || | ||||| Sbjct 5530 CTTTGGTGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAAAAGCCCTTCGACAT 5471 Query 117201 CTTATCGTAGGTCTC 117215 | |||||| ||||| Sbjct 5470 CAGATCGTACGTCTC 5456 >seq8796 Length=7791 Score = 109 bits (120), Expect = 7e-19 Identities = 345/531 (65%), Gaps = 18/531 (3%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || || ||| ||||||||||||||| ||||| || | || ||| ||||||| Sbjct 7758 GTACTCGCCAACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCAT 7699 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACG 127350 || || || || | | | ||| | | || ||| | | || || || Sbjct 7698 GAAGTCGAAGGGCTGCGTCACGTTGTAGTGCTTCTCCAGCCCCAGCGACACCAGCAGCCG 7639 Query 127351 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 127410 |||| ||| |||| ||||||| |||||| ||| | |||||| ||||| || Sbjct 7638 GTCCGCAACGAACTCGATGTACTGCGACATCAGCTCCGCGTTCATGCCGATCAGCCGCAC 7579 Query 127411 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTG 127470 || |||||||| |||||||| | ||| |||| ||| || ||| | ||| | | Sbjct 7578 CGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCCACGATGATCTCCAG 7519 Query 127471 AATAGTGTC-CACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCA------- 127522 | || | | ||| || ||| | | || ||||| |||||| Sbjct 7518 CACGCGCTCGCGCGGCAG--CTTGTGCTTGATGTGC----GAGTTGTACAGCAGGCACGC 7465 Query 127523 -AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 127581 || || ||| || |||||||| || ||||| || || || ||| ||| || || Sbjct 7464 GAAGTCCGTGTGCAGCCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCAGG 7405 Query 127582 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 127641 ||| || || |||||||||| |||||| | ||| || || || || ||||||||||| || Sbjct 7404 CATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCCGAGAAGAAGATGCC 7345 Query 127642 CTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCA 127701 |||||| ||||||| | | || ||||| || | || | | | | | ||| Sbjct 7344 CTCCACCGCCGCGAACCCGATCAGCCGCTCCTGGAA-GCTCGCGCC--GCTCCCGATCCA 7288 Query 127702 CTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 | || ||||||| ||||| |||| ||| || |||| ||||||||||| Sbjct 7287 CCGCACAGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 7237 >seq6209 Length=3470 Score = 109 bits (120), Expect = 7e-19 Identities = 345/531 (65%), Gaps = 18/531 (3%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || || ||| ||||||||||||||| ||||| || | || ||| ||||||| Sbjct 656 GTACTCGCCAACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCAT 597 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACG 127350 || || || || | | | ||| | | || ||| | | || || || Sbjct 596 GAAGTCGAAGGGCTGCGTCACGTTGTAGTGCTTCTCCAGCCCCAGCGACACCAGCAGCCG 537 Query 127351 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 127410 |||| ||| |||| ||||||| |||||| ||| | |||||| ||||| || Sbjct 536 GTCCGCAACGAACTCGATGTACTGCGACATCAGCTCCGCGTTCATGCCGATCAGCCGCAC 477 Query 127411 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTG 127470 || |||||||| |||||||| | ||| |||| ||| || ||| | ||| | | Sbjct 476 CGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCCACGATGATCTCCAG 417 Query 127471 AATAGTGTC-CACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCA------- 127522 | || | | ||| || ||| | | || ||||| |||||| Sbjct 416 CACGCGCTCGCGCGGCAG--CTTGTGCTTGATGTGC----GAGTTGTACAGCAGGCACGC 363 Query 127523 -AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 127581 || || ||| || |||||||| || ||||| || || || ||| ||| || || Sbjct 362 GAAGTCCGTGTGCAGCCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCAGG 303 Query 127582 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 127641 ||| || || |||||||||| |||||| | ||| || || || || ||||||||||| || Sbjct 302 CATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCCGAGAAGAAGATGCC 243 Query 127642 CTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCA 127701 |||||| ||||||| | | || ||||| || | || | | | | | ||| Sbjct 242 CTCCACCGCCGCGAACCCGATCAGCCGCTCCTGGAA-GCTCGCGCC--GCTCCCGATCCA 186 Query 127702 CTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 | || ||||||| ||||| |||| ||| || |||| ||||||||||| Sbjct 185 CCGCACAGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613391914328280