Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq8796 159 6e-34 seq6209 150 3e-31 seq9113 122 1e-22 >seq8796 Length=7791 Score = 159 bits (176), Expect = 6e-34 Identities = 563/864 (65%), Gaps = 18/864 (2%) Strand=Plus/Minus Query 159628 CTTCTTGTATTGCGACA-CATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTG 159686 ||||| ||| | || || | ||||||||||| ||||| |||||||||| || || || Sbjct 7764 CTTCTGGTACT-CGCCAACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCA 7706 Query 159687 ATTCCATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCA 159746 |||||||| |||| || | | |||||| ||| ||||| | || || | | ||| Sbjct 7705 TCTCCATGAAGTCGAAGGGCTGCGTCACGTTGTAGTGCTTCTCCAGCCCCAGCGACACCA 7646 Query 159747 GCAACCTGTCTGCCACAAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCAGC 159805 ||| || ||| || || || |||||||| || | ||||| |||| ||| || || | | Sbjct 7645 GCAGCCGGTCCGCAACGAACTCGATGTA-CTGCGACATCAGCTCCGCGTTCATGCCGATC 7587 Query 159806 AGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACA 159865 |||| || || ||||| || | | ||||| ||| || | ||||| || | Sbjct 7586 AGCCGCACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCCACGATG 7527 Query 159866 ATCTGCGAGACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCAC 159925 |||| | || || ||| | | ||||| | ||||| || |||| |||||| Sbjct 7526 ATCTCCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGAGTTGTACAGCAGGCAC 7467 Query 159926 GCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCC 159985 || ||||| |||||| |||||||| || ||||| | ||||||| | | || || Sbjct 7466 GCGAAGTCCGTGTGCAGCCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 7407 Query 159986 GGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGAT 160044 ||||| | ||| ||| || ||||| || | | |||| || ||| | | || ||||| Sbjct 7406 GGCATCAGCCCGCGCTTCTTCAGCCAGAACA-GCGCGCAGAACGACCCCGAGAAGAAGAT 7348 Query 160045 CCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGT 160104 |||||||| ||||| ||| | | |||| ||| || ||| | | | | | Sbjct 7347 GCCCTCCACCGCCGCGAACCCGATCAGCCGCTCCTGGAAGCTCGCGCCGCTCCC---GAT 7291 Query 160105 CCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAA 160164 ||||| ||||| || |||||||| ||||||||| || || || |||| | Sbjct 7290 CCACCGCACAGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGCGTGCAG 7231 Query 160165 CAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTC 160224 || | || ||||| ||| |||| || | | |||| ||||||| | || Sbjct 7230 CAGCCGCAGCTTCTCCTCGCTGTCCGTGATGTACGTGTCCAGCAGCACCGAGTACGTCTC 7171 Query 160225 TGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTG 160284 | ||| | || || || || ||| || |||||| ||||||| | || Sbjct 7170 CGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAGAACGCGCGCGCCTCCGGCACCTT 7111 Query 160285 CACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAA 160344 ||| || |||| | || |||| || || | || | |||||| | | ||||| Sbjct 7110 CACGTCGCTCATGAAGCGCTGCGCCAGGTTCTCAATCACGATGCCGTCGCTGCCGGCAAA 7051 Query 160345 GAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTG 160404 ||| |||| |||||| |||||| || | ||| | | ||| || ||| ||||||| Sbjct 7050 GAACGCCAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGCCTC---TCCCAGTC 6994 Query 160405 TGTCACGTCTTGGGCCAAATCAACCTCTTCC-GCGCTCCAATTGGCAGCCTGAGCAGTT- 160462 ||| ||| | | | | || | ||| ||| ||| |||| | |||| || | | | Sbjct 6993 CTTCATGTCGTTGCCGAGGTCGATCTCCTCCAGCG-TCCAGAT-GCAG-CTCTCCTGCTC 6937 Query 160463 -TTGTACATGGCCCAGATGGCGTG 160485 |||||| || ||||||| |||| Sbjct 6936 CTTGTACTTGCGCCAGATGTCGTG 6913 >seq6209 Length=3470 Score = 150 bits (166), Expect = 3e-31 Identities = 310/453 (68%), Gaps = 6/453 (1%) Strand=Plus/Minus Query 159628 CTTCTTGTATTGCGACA-CATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTG 159686 ||||| ||| | || || | ||||||||||| ||||| |||||||||| || || || Sbjct 662 CTTCTGGTACT-CGCCAACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCA 604 Query 159687 ATTCCATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCA 159746 |||||||| |||| || | | |||||| ||| ||||| | || || | | ||| Sbjct 603 TCTCCATGAAGTCGAAGGGCTGCGTCACGTTGTAGTGCTTCTCCAGCCCCAGCGACACCA 544 Query 159747 GCAACCTGTCTGCCACAAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCAGC 159805 ||| || ||| || || || |||||||| || | ||||| |||| ||| || || | | Sbjct 543 GCAGCCGGTCCGCAACGAACTCGATGTA-CTGCGACATCAGCTCCGCGTTCATGCCGATC 485 Query 159806 AGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACA 159865 |||| || || ||||| || | | ||||| ||| || | ||||| || | Sbjct 484 AGCCGCACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCCACGATG 425 Query 159866 ATCTGCGAGACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCAC 159925 |||| | || || ||| | | ||||| | ||||| || |||| |||||| Sbjct 424 ATCTCCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGAGTTGTACAGCAGGCAC 365 Query 159926 GCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCC 159985 || ||||| |||||| |||||||| || ||||| | ||||||| | | || || Sbjct 364 GCGAAGTCCGTGTGCAGCCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 305 Query 159986 GGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGAT 160044 ||||| | ||| ||| || ||||| || | | |||| || ||| | | || ||||| Sbjct 304 GGCATCAGCCCGCGCTTCTTCAGCCAGAACA-GCGCGCAGAACGACCCCGAGAAGAAGAT 246 Query 160045 CCCCTCCACGGCCGCAAACGCCACGAGCCTCTC 160077 |||||||| ||||| ||| | | |||| ||| Sbjct 245 GCCCTCCACCGCCGCGAACCCGATCAGCCGCTC 213 >seq9113 Length=16536 Score = 122 bits (134), Expect = 1e-22 Identities = 553/862 (64%), Gaps = 16/862 (2%) Strand=Plus/Minus Query 204841 GGCGGCCAGATTGCACACCGCGGGTCTG-TGTGGCTCGCTCACCTCCACGATCTCGGTGC 204899 || ||| || ||||||||||||| ||| | ||| | |||||| |||||||||| Sbjct 6238 GGAGGCGAGGTTGCACACCGCGG-TCTCCTCCGGCGACGTGTACTCCACAATCTCGGTGC 6180 Query 204900 ACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGACTTGCGGTTACAGGAGT 204959 | | ||| |||||| | || | | || |||||| ||||||| ||| || | || Sbjct 6179 AGAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCTGTTGCACGCGT 6120 Query 204960 CCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TCGCAGAATGTGGGTCCAC 205018 ||||||| | |||||||| | ||| |||| ||||| || ||| ||||| |||| Sbjct 6119 CCTTGTAGAGGATGAACGGGACGCCGGTCTCGATCTGCGACTCG-AGAATCGCAAACCAC 6061 Query 205019 AATTCGCGAGCCTCCACTTGCTTCACGTACATCCCTTGAGACTCGTATTTTGTGTACAGC 205078 | || | |||| | || ||| || | | |||||| ||||| Sbjct 6060 ACCTCCTGTGCCTGGATCGTCTGCACTCCGCGGCCCTCCGCCTCGTAGCGCTCATACAGG 6001 Query 205079 GCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACATTTT-TTGGGACACATCAG 205137 | | || || ||||| ||| | || || || || | ||||| | |||||| Sbjct 6000 CGCTCGAACTCCTCGCCGTAGCAGTCGCTGAGGCCCGGGCACGTGCTTGGGTC-CATCAG 5942 Query 205138 AGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTGATCCACAGGCCGTA 205197 | |||| || || ||||| | || ||| ||||||||| ||||||||| |||| Sbjct 5941 CGTCCACTTCCCCTCACTCTTCACGCGCTTCATGAACAGGTCGGGGATCCACAGCGCGTA 5882 Query 205198 AAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGC 205257 || || || || || | |||| | || ||| |||| ||| |||| Sbjct 5881 GAAGAGGTCGCGCGCACGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAGG-AAGC 5823 Query 205258 CGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCC 205316 || | |||||||||||||||||||| | | | ||| | ||||| | ||| | Sbjct 5822 CGAAGATGTCGGCGTGCCACGGCTCGAGGTAAATGGCGAAGGCGCCCTTGCGCTTACCGC 5763 Query 205317 CACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGT 205376 | ||||||||||| ||| | | | |||||| || ||||||||||||||||| |||| Sbjct 5762 CGCCCTGGTCCACGTAGCGGGCCGTGTTGTTGAACACGCGCAGCATCGGCACCAGGCCGT 5703 Query 205377 TGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCG 205436 | | || |||||||||| |||| ||| | | | | |||| | | | Sbjct 5702 TCGACGTGCCGTTCGTGCCAGCGATGTAGCTGCCGGCGGAGCGGATGTTGTGCACGTGCA 5643 Query 205437 CGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCACTCTTGCAGAGTGCTGTAGATGC 205496 ||| || ||||| | |||| ||| ||||||||| | ||| ||| ||| || | Sbjct 5642 GGCCGATGCCGCCGGCCGCCTTGCTGATGACGGCGCACTCCTTCAGCGTGTCGTAAATCC 5583 Query 205497 CTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACGAAGCCAGCT-TGGCAAAGTTG 205555 | | ||| |||||| | | || || ||||||| || || ||| | | Sbjct 5582 CGTCAATGCTGTCGTCCTTCGACGCGACGAGGAAGCACGAGCTCATCTGCGGCTTTGGT- 5524 Query 205556 GTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTG---AAGCGCTTCTCGCTCAAACAC 205612 ||||| |||| |||||| || ||| ||||||| || |||| |||| ||| | Sbjct 5523 GTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAAAAGCCCTTCGACATCAGA--- 5467 Query 205613 CTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTGAATACCTATGGCGATCCTCATG 205672 ||| ||||| ||||| ||| || ||| | |||| || || | ||| | | || | Sbjct 5466 TCGTACGTCTCACGCACGTTCTTGAGGTCGCCGACGTGGATGCCGAGGGCAACGCGCAGG 5407 Query 205673 AAGAGGTGTTGAGGTCTCTCCA 205694 ||||| || || || | |||| Sbjct 5406 AAGAGCTGCTGCGGGCGTTCCA 5385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795005780398480