Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value SEQ14990 152 6e-32 seq6451 136 4e-27 seq3668 136 4e-27 seq5330 107 2e-18 >SEQ14990 Length=15354 Score = 152 bits (168), Expect = 6e-32 Identities = 174/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||||| ||| || | | |||| ||| || |||| || |||||| ||||| ||||| Sbjct 9187 TTATTGGCCACCGCGCAGGCGCAGCACNAGGTGCAGCGTCGACTCCTTCTGGATGTTGTA 9128 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||| | || ||||| | || || ||||||||||| ||||| |||| |||||||||||| Sbjct 9127 GTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTC 9068 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539 | ||| | || |||||||||| |||||| ||| | || | | ||||||||| | Sbjct 9067 CGGCGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGC 9008 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || |||| || ||||| ||||| |||||||| || || ||||| ||||| Sbjct 9007 CTCGACCTCCAGCGCAATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 8954 >seq6451 Length=1481 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||| || |||| || |||||| ||||| |||||||| | || ||||| | Sbjct 3 CGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 62 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || |||||||||||||| || |||| |||||||||||| | ||| | || ||||||| Sbjct 63 TCTTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 122 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||| | || | | |||||||||| || || || | | ||| Sbjct 123 TCCTGAATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATC 182 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || ||||| || || |||||||| ||||| Sbjct 183 GTCTTACCGGTCAGGGTCTTCACAAAGATCTGCAT 217 >seq3668 Length=3103 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||| || |||| || |||||| ||||| |||||||| | || ||||| | Sbjct 173 CGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 232 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||||||||| |||| |||||||||||| | ||| | || ||||||| Sbjct 233 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 292 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||| | || | | |||||||||| || || || | | ||| Sbjct 293 TCCTGAATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATC 352 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || ||||| || || || ||||| ||||| Sbjct 353 GTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 387 >seq5330 Length=12009 Score = 107 bits (118), Expect = 2e-18 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||| || |||| || |||||| ||||| |||||||| | || ||||| | Sbjct 142 CGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 83 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||||||||| |||| |||||||||||| | ||| | || ||||||| Sbjct 82 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 23 Query 46499 TCCATGATCTTC 46510 ||| |||||| Sbjct 22 TCCTGAATCTTC 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565132184639160