Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq8796 322 5e-83 seq6209 232 7e-56 SEQ14990 138 1e-27 seq3668 134 1e-26 seq6451 125 7e-24 seq5330 104 2e-17 >seq8796 Length=7791 Score = 322 bits (356), Expect = 5e-83 Identities = 578/830 (70%), Gaps = 16/830 (2%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 |||||||||| || || || ||||| ||||| ||||| || || || || || |||| Sbjct 7776 CATCACGCCAGCCTTCTGGTACTCGCCAACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTG 7717 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 || || || | | ||| || || ||||| | | |||||||||||| | | | Sbjct 7716 CAGCGAGATCATCTCCATGAAGTCGAAGGGCTGCGTCACGTTGTAGTGCTTC-TCCAGCC 7658 Query 132711 C-AGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAA 132768 | || || ||||||| ||| || |||||||||||||| |||||||| | | ||| Sbjct 7657 CCAGCGACACCAGCAGCCGGTCCGCAACGAACTCGATGTACTGCGACATCAGCTCCGCGT 7598 Query 132769 TTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGAC 132827 | | | || | ||| |||||||||||||| ||| || ||| || |||||||| || Sbjct 7597 TCATG-CCGATCAGCCGCACCGGCAGCGCGTCGCAGATGAACTCGC-GCTCGATGTTCAC 7540 Query 132828 CGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCT-CGGCCGTTGCACCAAATGC---T 132883 |||||| || ||| ||| |||||| | |||| | || ||| | ||| | Sbjct 7539 CGCGTCCACGATGATCTCCAGCACGCGCTC-GCGCGGCAGCTTGTGCTTGATGTGCGAGT 7481 Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 || ||| || ||| || ||||| |||| |||||||| | || || || ||||||| Sbjct 7480 TGTACAGCAGGCACGCGAAGTCCGTGTGCAGCCCCTCGTCGCGCGAGATCAGCTCGTTGC 7421 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 |||| |||| || ||||| || ||||| || || ||||| || | ||| ||| | Sbjct 7420 TGAACGTCAGCCCAGGCATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACC 7361 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063 |||| ||||||| |||||| || |||||||| | | ||| ||||| ||| | || Sbjct 7360 CCGAGAAGAAGATGCCCTCCACCGCCGCGAACCCGATCAGCCGCTCCTGGAAGCTCGCGC 7301 Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 | ||| ||||||| |||| ||||| || ||||| | | || |||||| ||||| | Sbjct 7300 C---GCTCCCGATCCACCGCACAGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCT 7244 Query 133124 CGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC-ACGTAGGTGTCGATGAGG 133182 ||| |||| || || || || ||||| || | | || | ||| ||||| | || Sbjct 7243 GGATCGCGTGCAGCAGCCGCAGCTTCTCCTC-GCTGTCCGTGATGTACGTGTCCAGCAGC 7185 Query 133183 GTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGC 133242 ||| ||| | |||||||| | ||||||||| | || || ||||| || ||| Sbjct 7184 ACCGAGTACGTCTCCGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAGAACGCGCGC 7125 Query 133243 GCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCG 133302 ||||| ||||| ||| || ||| |||| |||| || || | ||||||||| Sbjct 7124 GCCTCCGGCACCTTCACGTCGCTCATGAAGCGCTGCGCCAGGTTCTCAATCACGATGCCG 7065 Query 133303 TCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAG 133362 |||||| |||| || || |||||||||||||||||||| || ||||| |||||||| Sbjct 7064 TCGCTGCCGGCAAAGAACGCCAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGC 7005 Query 133363 CGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCA 133412 | ||||||||| | |||| ||| ||||| | |||||| | ||||| Sbjct 7004 CTCTCCCAGTCCTTCATGTCGTTGCCGAGGTCGATCTCCTCCAGCGTCCA 6955 >seq6209 Length=3470 Score = 232 bits (256), Expect = 7e-56 Identities = 468/680 (69%), Gaps = 16/680 (2%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 |||||||||| || || || ||||| ||||| ||||| || || || || || |||| Sbjct 674 CATCACGCCAGCCTTCTGGTACTCGCCAACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTG 615 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 || || || | | ||| || || ||||| | | |||||||||||| | | | Sbjct 614 CAGCGAGATCATCTCCATGAAGTCGAAGGGCTGCGTCACGTTGTAGTGCTTC-TCCAGCC 556 Query 132711 C-AGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAA 132768 | || || ||||||| ||| || |||||||||||||| |||||||| | | ||| Sbjct 555 CCAGCGACACCAGCAGCCGGTCCGCAACGAACTCGATGTACTGCGACATCAGCTCCGCGT 496 Query 132769 TTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGAC 132827 | | | || | ||| |||||||||||||| ||| || ||| || |||||||| || Sbjct 495 TCATG-CCGATCAGCCGCACCGGCAGCGCGTCGCAGATGAACTCGC-GCTCGATGTTCAC 438 Query 132828 CGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCT-CGGCCGTTGCACCAAATGC---T 132883 |||||| || ||| ||| |||||| | |||| | || ||| | ||| | Sbjct 437 CGCGTCCACGATGATCTCCAGCACGCGCTC-GCGCGGCAGCTTGTGCTTGATGTGCGAGT 379 Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 || ||| || ||| || ||||| |||| |||||||| | || || || ||||||| Sbjct 378 TGTACAGCAGGCACGCGAAGTCCGTGTGCAGCCCCTCGTCGCGCGAGATCAGCTCGTTGC 319 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 |||| |||| || ||||| || ||||| || || ||||| || | ||| ||| | Sbjct 318 TGAACGTCAGCCCAGGCATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACC 259 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063 |||| ||||||| |||||| || |||||||| | | ||| ||||| ||| | || Sbjct 258 CCGAGAAGAAGATGCCCTCCACCGCCGCGAACCCGATCAGCCGCTCCTGGAAGCTCGCGC 199 Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 | ||| ||||||| |||| ||||| || ||||| | | || |||||| ||||| | Sbjct 198 C---GCTCCCGATCCACCGCACAGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCT 142 Query 133124 CGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACG-CACGTAGGTGTCGATGAGG 133182 ||| |||| || || || || ||||| | || | || | ||| ||||| | || Sbjct 141 GGATCGCGTGCAGCAGCCGCAGCTTCTCCT-CGCTGTCCGTGATGTACGTGTCCAGCAGC 83 Query 133183 GTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGC 133242 ||| ||| | |||||||| | ||||||||| | || || ||||| || ||| Sbjct 82 ACCGAGTACGTCTCCGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAGAACGCGCGC 23 Query 133243 GCCTCGACCACCTGCACTTC 133262 ||||| ||||| ||| || Sbjct 22 GCCTCCGGCACCTTCACGTC 3 >SEQ14990 Length=15354 Score = 138 bits (152), Expect = 1e-27 Identities = 172/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| ||||| | | || |||||||||| | Sbjct 8954 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATTGCGCTGGAGGTCGAGGCCAGC 9013 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 |||| | | |||| | || | || || | ||||| ||||| || ||||||| ||| Sbjct 9014 GACACGATCGAGAACG-TGAAGGCGAAGATTCAGGACAAGGAGGGCAT-CCCGCCGGACC 9071 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| |||||||| || | ||||| ||| ||||||| Sbjct 9072 AGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACA 9131 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||||||| ||||| |||||||||| | |||||||| || | || |||| Sbjct 9132 ACATCCAGAAGGAGTCGACGCTGCACCTNGTGCTGCGCCTGCGCGGTGGCC 9182 >seq3668 Length=3103 Score = 134 bits (148), Expect = 1e-26 Identities = 171/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || || ||| || |||| |||||||| | | Sbjct 387 ATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACGATCGCCCTCGAGGTCGAGGCGAGC 328 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 |||| | | | |||| | || | || || | ||||| ||||| || ||||||| ||| Sbjct 327 GACACCATCGAGAACG-TGAAGGCGAAGATTCAGGACAAGGAGGGCAT-CCCGCCGGACC 270 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| |||||||| || | ||||| ||| ||||||| Sbjct 269 AGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACA 210 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| |||||||||| | |||||||| || | || ||| Sbjct 209 ACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTGCGCCTGCGCGGTGGC 160 >seq6451 Length=1481 Score = 125 bits (138), Expect = 7e-24 Identities = 161/217 (74%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || || || || ||| || |||| |||||||| | | Sbjct 217 ATGCAGATCTTTGTGAAGACCCTGACCGGTAAGACGATCGCCCTCGAGGTCGAGGCGAGC 158 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 |||| | | | |||| | || | || || | ||||| ||||| || ||||||| ||| Sbjct 157 GACACCATCGAGAACG-TGAAGGCGAAGATTCAGGACAAGGAGGGCAT-CCCGCCGGACC 100 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | || ||||| |||||||| || | ||||| ||| ||||||| Sbjct 99 AGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAAGAGGGCCGCACGCTCGCGGACTACA 40 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||| ||||| |||||||||| | |||||||| Sbjct 39 ACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTGCG 3 >seq5330 Length=12009 Score = 104 bits (114), Expect = 2e-17 Identities = 106/136 (78%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCG-ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGA 38395 ||||| ||||| || ||||||| |||| ||||| || || | ||| ||||| |||||||| Sbjct 21 GACAAGGAGGGCAT-CCCGCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGA 79 Query 38396 CGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 || | ||||| ||| |||||||||||||| ||||| |||||||||| | ||||| Sbjct 80 GGAGGGCCGCACGCTCGCGGACTACAACATCCAGAAGGAGTCGACGCTGCACCTCGTGCT 139 Query 38456 GCGTTTGAGAGGCGGC 38471 ||| || | || ||| Sbjct 140 GCGCCTGCGCGGTGGC 155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500078811278720