Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq9113 311 2e-79 seq8796 208 1e-48 seq6209 174 3e-38 >seq9113 Length=16536 Score = 311 bits (344), Expect = 2e-79 Identities = 981/1495 (66%), Gaps = 55/1495 (4%) Strand=Plus/Minus Query 212694 AGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATA 212753 |||||||| ||||| |||||| ||| | || | | ||| ||||||||| || | Sbjct 7032 AGGTTCAGCGACTGGGACTGGTCAATGTACTGGCCGCGGTCGCGGGCCATGTCGATCAGC 6973 Query 212754 TCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCG 212813 | | ||| | || ||||||||| || | | | || || ||||| || |||| || | Sbjct 6972 TTGCGCTGCGGGATCTCCCACACCGTGCGGTACAGCTCCTTCAGGTCGTCCGGGATGCTG 6913 Query 212814 GGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGCTGCAGGCGCATGTCCTCGTTCCAG 212873 |||| || |||| || || ||| | | | || |||||| ||| ||||| Sbjct 6912 TCGATGGTCAGCACGGAGCCGTTGTAGGAGATGATCTCGTTGCGCATCGTCTCATTCCAC 6853 Query 212874 AGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAG 212933 ||||| | | ||| | | || |||| ||| || | | |||| || || Sbjct 6852 AGGCCGCGCTTAATGAGGTCCATCACGAGGTACTTGTTCACCACCGGGAACTCGCCGCTC 6793 Query 212934 AGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGA 212993 ||||| | | || | ||| || ||| | ||||||| || ||||||||| || || Sbjct 6792 AGCACGCGACGAACATAGATGTTCGAGGTGAAAGGCTCGAAGCACTCGTTGTTGCCGAGG 6733 Query 212994 ATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGC 213053 || || | || ||| |||||||| || || | ||||||| ||| | || ||| | Sbjct 6732 ATTTGCGAGGTCGAGGCGGTGGGCATCGGCGCAAGCAGGAGAGAGTTGCGCATGCCGACC 6673 Query 213054 TCGCCGATGAGGCGCC-GAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTC---CTCGTC 213109 | | | || || ||| | |||| ||||| | ||| | | || | || Sbjct 6672 TGCACCACCTTCTGCTTGAGGCTGT-CCCAATCCCACCGGCCG--CTGTTCGGGCGCGGG 6616 Query 213110 CTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGA 213169 ||| ||||||||||| ||||||| |||||| | || | |||||||||| | | | Sbjct 6615 -TTC---TTCCACATGTCGAACTGCAGGATGCCCTGACTGGCCGGGCTGCCCTTGAAGGT 6560 Query 213170 GGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGAT 213229 ||||||||| | |||||| |||||||| |||| || || ||||||| ||||||| Sbjct 6559 CTCGTAGGGGCCCTCCTCCTTCGCCAGCTCCATCGACGACTCCACGGCAGCGAAGTAGAT 6500 Query 213230 GGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCAT 213289 ||||| || |||||| ||| | || ||||| ||| | |||||||| || Sbjct 6499 CGTTTCGAAGATCTCCGCGTTCACGCGCTGCGCCTCAGGGCTGGCGAAGGGCAGGCGCAG 6440 Query 213290 GCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTT 213349 | ||| | || ||||| || || || || | ||||| || | || | || ||| Sbjct 6439 CAGGATGAAGGCGTCCGCCAGGCCTTGCACGCCCAGGCCGACCGGGCGGTTGCGCATGTT 6380 Query 213350 AGACTTGGAGCACTC---CTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTT 213406 || | || | ||||| ||||| |||||| ||| |||| ||| ||||| Sbjct 6379 GC---TGCGGTACGCGGTCTCCACCGGGTAGTAGTTGCGGTCAATGACGCGGTTCAGGTT 6323 Query 213407 GCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTC 213466 ||| ||| | || || || | ||| || ||||| || | || | | || Sbjct 6322 GCGCGTGATCTGCTTCGTCACGCTGTACAGCAGCTGGTGATCGATCTCGCGCTTCTCCTC 6263 Query 213467 CTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGC---CACCTCCTGAGA 213523 | ||| || |||||||||||| ||| |||||||| || || | ||||| | || Sbjct 6262 ATTCACGAAGCGCGGCAGGGCGATGGAGGCGAGGTTGCACACCGCGGTCTCCTCCGGCGA 6203 Query 213524 GTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTG 213583 |||||||||| ||||||||||| ||||| ||| ||||||||| ||||||| Sbjct 6202 C---GTGTACTCCACAATCTCGGTGCAGAGGTTCGAGCACTTGATGGTGCCGAGGTTCTT 6146 Query 213584 GTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAG 213643 ||||| ||||| |||| | ||||||||||| ||| | ||| |||||||| | Sbjct 6145 CTGGTTCGACTTGCTGTTGCACGCGTCCTTGTAGAGGATGAACGGGACGCCGGTCTCGAT 6086 Query 213644 CTGGGACACCAGTATCTGGCTCCAGAGGTACCTG-GCCTTGACCACCCGCCTGACAGCTC 213702 ||| ||| | || ||| ||| | | |||| |||| || | | ||| || ||| Sbjct 6085 CTGCGACTCGAGAATCGCAAACCACACCT-CCTGTGCCTGGATC----GTCTG-CA-CTC 6033 Query 213703 CGGG---CGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCC---CAGACCC 213756 || | | |||||||| | || || || | ||| || | ||| ||| | | Sbjct 6032 CGCGGCCCTCCGCCTCGTAGCGCTCATACAGGCGCTCGAACTCCTCGCCGTAGCAGTCGC 5973 Query 213757 TGTCCAGTCCCGGACAGGATGC--GGGACACATGAGGCTCCAGTCCCCGTCATCTCTG-A 213813 || || ||||| || | ||| ||| | ||| || |||| | ||| ||| |||| | Sbjct 5972 TG---AGGCCCGGGCACG-TGCTTGGGTC-CATCAGCGTCCACTTCCCCTCA-CTCTTCA 5919 Query 213814 CTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCT 213873 | | || |||||||||||| |||| |||||||||| ||| ||||| | | | | | Sbjct 5918 CGCGCTTCATGAACAGGTCGGGGATCCACAGCGCGTAGAAGAGGTCGCGCGCACGCTGGT 5859 Query 213874 CGTCCACTCCAGAGTTT---TTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACG 213930 ||||| || | ||| || |||| || ||| | |||||||| |||||||||| Sbjct 5858 CGTCCTTGCCGGTGTTGCGCTTCAGCAGC---AGGAAGCCGAAGATGTCGGCGTGCCACG 5802 Query 213931 GCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTT---GCCGCCCTGGTCCACCAGCCTGG 213987 |||| | ||| ||||| ||||||||| | ||| ||||||||||||||| | || Sbjct 5801 GCTCGAGGTAAATGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGG 5742 Query 213988 CCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCG 214047 || ||||||| | |||||| | || ||||| ||||| ||| ||||| || || | Sbjct 5741 CCGTGTTGTTGAACACGCGCAGCATCGGCACCAGGCCGTTCGACGTGCCGTTCGTGCCAG 5682 Query 214048 CTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACT 214107 | || || ||||| || | | |||| || | || || ||||| ||||| || Sbjct 5681 CGATGTAGCTGCCGGCGGAGCGGATGTTGTGCACGTGCAGGCCGATGCCGCCGGCCGCCT 5622 Query 214108 TGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATC 214162 || ||| | |||||| | ||| || || || ||| | |||||||| || Sbjct 5621 TGCTGATGACGGCGCACTCCTTCAGCGTGTCGTAAATCCCGTCAATGCTGTCGTC 5567 >seq8796 Length=7791 Score = 208 bits (230), Expect = 1e-48 Identities = 575/868 (66%), Gaps = 15/868 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| |||| || |||||| |||| Sbjct 7761 CTGGTACTCGCCAACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTC 7702 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||||||| |||||| | | ||| || | ||| |||| | ||||||| Sbjct 7701 CATGAAGTCGAAGGGCTGCGTCACGTTGTAGTGCTTCTCCAGCCCCAGCGACACCAGCAG 7642 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | ||||| ||| |||||||||| | ||||| || ||||||||| || || Sbjct 7641 CCGGTCCGCAACGAACTCGATGTACTGCGACATCAGCTCCGCGTTCATGCCGATCAGCCG 7582 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||| |||| || | || ||||| ||| || | ||| || ||| | | |||| Sbjct 7581 CACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCCACGATGATCTC 7522 Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGCGC---AGGTGCTTGGCATAGAGCATGCAGGC 48135 | ||||| ||| || ||| || | |||| | || |||| ||| || Sbjct 7521 CAGCACGCG---CTCGCGCGGCAGCTTGTGCTTGATGTGCGAGTTGTACAGCAGGCACGC 7465 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 |||||| |||||| || ||||| || ||| ||| ||||| ||| || ||||| Sbjct 7464 GAAGTCCGTGTGCAGCCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCAGG 7405 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||| | ||| | || || |||||||| | || ||| || || |||||||||||||| Sbjct 7404 CATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCCGAGAAGAAGATGCC 7345 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315 |||||| ||||||||| || | |||| ||| | | ||| || | || |||||| Sbjct 7344 CTCCACCGCCGCGAACCCGATCAGCCGCTC-CTGGAAG-CTCGCGCCGCTC-CCGATCCA 7288 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375 | ||||| || |||||||||| |||||| || ||||||| || || | | || Sbjct 7287 CCGCACAGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGCGTGCAGCAG 7228 Query 48376 CTTCTTGCACTCACCT-GC-GTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCA 48433 | | || || ||| || ||||| | || || |||||| | |||| |||| Sbjct 7227 CCGC-AGC-TTCTCCTCGCTGTCCGTGATGTACGTGTCCAGCAGCACCGAGTACGTCTCC 7170 Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493 ||||| | ||||| || | ||||||||||||||| || | ||||| ||||| | Sbjct 7169 GAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAGAACGCGCGCGCCTCCGGCACCTTC 7110 Query 48494 ACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAG 48553 || || | ||| | || | ||| |||||| | || || || || | |||||| Sbjct 7109 ACGTCGCTCATGAAGCGCTGCGCCAGGTTCTCAATCACGATGCCGTCGCTGCCGGCAAAG 7050 Query 48554 AAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGT 48613 || || || || || || | ||| || ||||| || | | || | |||| ||| Sbjct 7049 AACGCCAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGCCTCTCCCAGTCCTTC 6990 Query 48614 ACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGA-CGCGAGTGCTTTTTTGTA 48672 | ||| ||||| ||||| | || |||| ||||||| | | | | ||| | ||||| Sbjct 6989 ATGTCGTTGCCGAGGTCGATCTCCTCCAGCGTCCAGATGCAGCTCTCCTGC-TCCTTGTA 6931 Query 48673 CATGCCCCATATGTCCGGATAGTCTATC 48700 | ||| ||| ||||| | ||| | ||| Sbjct 6930 CTTGCGCCAGATGTCGTGGTAGACAATC 6903 >seq6209 Length=3470 Score = 174 bits (192), Expect = 3e-38 Identities = 444/665 (67%), Gaps = 13/665 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| |||| || |||||| |||| Sbjct 659 CTGGTACTCGCCAACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTC 600 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||||||| |||||| | | ||| || | ||| |||| | ||||||| Sbjct 599 CATGAAGTCGAAGGGCTGCGTCACGTTGTAGTGCTTCTCCAGCCCCAGCGACACCAGCAG 540 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | ||||| ||| |||||||||| | ||||| || ||||||||| || || Sbjct 539 CCGGTCCGCAACGAACTCGATGTACTGCGACATCAGCTCCGCGTTCATGCCGATCAGCCG 480 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||| |||| || | || ||||| ||| || | ||| || ||| | | |||| Sbjct 479 CACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCCACGATGATCTC 420 Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGCGC---AGGTGCTTGGCATAGAGCATGCAGGC 48135 | ||||| ||| || ||| || | |||| | || |||| ||| || Sbjct 419 CAGCACGCG---CTCGCGCGGCAGCTTGTGCTTGATGTGCGAGTTGTACAGCAGGCACGC 363 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 |||||| |||||| || ||||| || ||| ||| ||||| ||| || ||||| Sbjct 362 GAAGTCCGTGTGCAGCCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCAGG 303 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||| | ||| | || || |||||||| | || ||| || || |||||||||||||| Sbjct 302 CATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCCGAGAAGAAGATGCC 243 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315 |||||| ||||||||| || | |||| ||| | | ||| || | || |||||| Sbjct 242 CTCCACCGCCGCGAACCCGATCAGCCGCTC-CTGGAAG-CTCGCGCCGCTC-CCGATCCA 186 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375 | ||||| || |||||||||| |||||| || ||||||| || || | | || Sbjct 185 CCGCACAGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGCGTGCAGCAG 126 Query 48376 CTTCTTGCACTCACCT-GC-GTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCA 48433 | | || || ||| || ||||| | || || |||||| | |||| |||| Sbjct 125 CCGC-AGC-TTCTCCTCGCTGTCCGTGATGTACGTGTCCAGCAGCACCGAGTACGTCTCC 68 Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493 ||||| | ||||| || | ||||||||||||||| || | ||||| ||||| | Sbjct 67 GAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAGAACGCGCGCGCCTCCGGCACCTTC 8 Query 48494 ACTTC 48498 || || Sbjct 7 ACGTC 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931357753342720