Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq9113 156 8e-33 seq8796 149 1e-30 seq6209 118 2e-21 >seq9113 Length=16536 Score = 156 bits (172), Expect = 8e-33 Identities = 522/803 (65%), Gaps = 21/803 (3%) Strand=Plus/Minus Query 221702 AGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATC 221761 ||||| | | ||| ||||| ||||| || ||| ||| || |||| | ||| Sbjct 6246 AGGGCGATGGAGGCGAGGTTGCACACCGCGGTCTCCTCCGGCGACGTGTACTCCACAATC 6187 Query 221762 TCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTG 221821 || || |||||||| |||||||||||| || |||| || || || ||||||| ||| Sbjct 6186 TCGGTGCAGAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCTGTTG 6127 Query 221822 GCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTG 221881 |||||||||||||| || || || |||| ||||| | ||| | | | |||||| Sbjct 6126 CACGCGTCCTTGTAGAGGATGAACGGGACGCCGGTCTCGATCTGCGACTCGAGAATCGCA 6067 Query 221882 TCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCAC---CCTCGGTCTTTTCATAC 221938 ||| | || ||| || || ||| ||| | | |||| | || | || Sbjct 6066 AACCACACCTC-CTGTGCCTGGA--TCGTCTGCACTCCGCGGCCCTCCGCCT---CGTAG 6013 Query 221939 CCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCG 221998 | ||| || || |||| || ||||| ||| ||||| || ||| || Sbjct 6012 CGCTCATACAGGCGCTCGAACTCCTCGCCGTAGCAGTCGCTGAGGCCCGGGCACGTGCTT 5953 Query 221999 GGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATC 222058 || |||||| |||| | | | || || | || |||||| ||||| |||||| Sbjct 5952 GGGTCCATCAGCGTCCACTTCCCCTCACTCTTCACGCGCTTCATGAACAGGTCGGGGATC 5893 Query 222059 CACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGA 222118 |||||||| | ||||| || | | ||||| || ||| |||| |||| | |||| Sbjct 5892 CACAGCGCGTAGAAGAGGTCGCGCGCACGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGC 5833 Query 222119 TCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGT 222178 || || | || ||||| |||||||||||||| || || | ||| | ||||| Sbjct 5832 AGCAGGAAGCCGAAGATGTCGGCGTGCCACGGCTCGAGGTAAATGGCGAAGGCGCCCTTG 5773 Query 222179 CGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGT 222238 ||||| ||| ||||| ||||| | || |||||| | ||| || |||| Sbjct 5772 CGCTTACCGCCGCCCTGGTCCACGTAGCGGGCCGTGTTGTTGAACACGCGCAGCATCGGC 5713 Query 222239 ACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTT- 222297 ||||| ||||| || ||||| ||||| ||||| ||| ||| | | ||| Sbjct 5712 ACCAGGCCGTTCGACGTGCCGTTCGTGCCAGCGATGTAGCTGCCGGCGGAGCGGATGTTG 5653 Query 222298 ---ACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAG 222354 || |||| |||||| || ||||| || ||| | |||||| ||| || Sbjct 5652 TGCACGTGCAG----GCCGATGCCGCCGGCCGCCTTGCTGATGACGGCGCACTCCTTCAG 5597 Query 222355 AGTGTCCATGATGCCCTCCATAGAGTCCTCCTT-GACGTTCAGCAGAAAACAAGACGACA 222413 ||||| || || || || ||| ||||| |||| | || || || || || Sbjct 5596 CGTGTCGTAAATCCCGTCAATGCTGTCGTCCTTCGACG-CGACGAGGAAGCACGAGCTCA 5538 Query 222414 TCTG-AGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCC 222472 |||| | |||||| | | |||||| || || || || ||||||| || || ||||| Sbjct 5537 TCTGCGGCTTTGGT-GTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAAAAGCCC 5479 Query 222473 CTAGACATCAGATCGTACGTCTC 222495 | |||||||||||||||||||| Sbjct 5478 TTCGACATCAGATCGTACGTCTC 5456 >seq8796 Length=7791 Score = 149 bits (164), Expect = 1e-30 Identities = 527/810 (65%), Gaps = 23/810 (3%) Strand=Plus/Plus Query 25522 GAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAG 25581 || ||||| || || | ||| |||||| | | |||| | || | | | |||| | Sbjct 6964 GAGGAGATCGACCTCGGCAACGACATGAAGGACTGGGAGAGGCTGAACGACGGGGAGCGG 7023 Query 25582 CATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAAT 25641 || || ||||| ||||| |||| |||||||| | | || || || |||| ||||| Sbjct 7024 CACTTCATCAAGCACGTGCTGGCGTTCTTTGCCGGCAGCGACGGCATCGTGATTGAGAAC 7083 Query 25642 CTGTGCG-AGAGATTCACCAGGGAAGTGCAGTACGTGGAGGC-CAAGTGTTTCTACGGTT 25699 ||| ||| || | |||| || || ||| || |||||| | | ||| |||||| | Sbjct 7084 CTG-GCGCAGCGCTTCATGAGCGACGTGAAGGTGCCGGAGGCGCGCGCGTT-CTACGGGT 7141 Query 25700 TCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACA 25759 ||||| || || || || | ||||| ||| ||| | ||| ||| ||||||| Sbjct 7142 TCCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCGGTGCTGCTGGACACGTACA 7201 Query 25760 TTACAGACGTCGCCGAGAGAGAT-CGGCTGTTTGGTGCCATCGAGCACATACCCAGCATC 25818 | || ||| || |||| || | |||||| | || ||| || || || ||||| Sbjct 7202 TCACGGACAGCGAGGAGA-AGCTGCGGCTGCTGCACGCGATCCAGACGATCCCGTGCATC 7260 Query 25819 AAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAG 25878 ||| ||||||| |||||| || ||||||| ||| |||| | || ||| Sbjct 7261 CAGAAGAAGGCGGAGTGGGCTGTGCGGTGGATCGGGAGCG---GCGCGAGCTTCCAGGAG 7317 Query 25879 CGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCAT 25937 |||||| | | || || || |||||||||||||| ||| || ||||| ||| || | Sbjct 7318 CGGCTGATCGGGTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGC-GCGCT 7376 Query 25938 CTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAG 25997 |||||||| ||| || ||| ||||| |||||| || ||||||||| ||| Sbjct 7377 GTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTC 7436 Query 25998 CAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCA 26057 | |||||||| || |||| || || || |||||||| |||| ||| | || Sbjct 7437 GCGCGACGAGGGGCTGCACACGGACTTCGCGTGCCTGCTGTACAACTCGCACATCAAGCA 7496 Query 26058 CAAACCTTCTCAAGAGACCGT-CTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGG 26116 ||| | | | ||| ||| || || |||||| || || ||| | |||||| | Sbjct 7497 CAAGCTGCCGCGCGAGCGCGTGCTGGAG-ATCATCGTGGACGCGGTGAACATCGAGCGCG 7555 Query 26117 AGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA-CTCATGAGC 26175 |||| | ||||||||| | || || ||| Sbjct 7556 AGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAAC-GCGGAGCTGATGTCG 7614 Query 26176 CAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTA 26234 || ||||| |||| || || |||| ||||| ||| | |||||| || | | | ||| Sbjct 7615 CAGTACATCGAGTTCGTTGCGGACCGGCTGCTGGTGTC-GCTGGGGCTGGAGAAGCACTA 7673 Query 26235 CA--GT-ACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAA 26291 || || |||| | || |||||||| ||||| | || ||| || | || ||||| || Sbjct 7674 CAACGTGACGC---AGCCCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAA 7730 Query 26292 CTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||| || |||| ||| ||||| || || Sbjct 7731 CTTCTTCGAGAAGAAGGTTGGCGAGTACCA 7760 >seq6209 Length=3470 Score = 118 bits (130), Expect = 2e-21 Identities = 415/640 (65%), Gaps = 19/640 (3%) Strand=Plus/Plus Query 25690 TTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTG 25749 |||||||| |||||| || || || || | ||||| ||| ||| | ||| ||| Sbjct 30 TTCTACGGGTTCCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCGGTGCTGCTG 89 Query 25750 ATGACGTACATTACAGACGTCGCCGAGAGAGAT-CGGCTGTTTGGTGCCATCGAGCACAT 25808 |||||||| || ||| || |||| || | |||||| | || ||| || || Sbjct 90 GACACGTACATCACGGACAGCGAGGAGA-AGCTGCGGCTGCTGCACGCGATCCAGACGAT 148 Query 25809 ACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTAC 25868 || ||||| ||| ||||||| |||||| || ||||||| ||| |||| | Sbjct 149 CCCGTGCATCCAGAAGAAGGCGGAGTGGGCTGTGCGGTGGATCGGGAGCG---GCGCGAG 205 Query 25869 GTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928 || ||||||||| | | || || || |||||||||||||| ||| || ||||| Sbjct 206 CTTCCAGGAGCGGCTGATCGGGTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTT 265 Query 25929 -TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACG 25987 ||| || | |||||||| ||| || ||| ||||| |||||| || ||||| Sbjct 266 CTGC-GCGCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACG 324 Query 25988 AGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCC 26047 |||| ||| | |||||||| || |||| || || || |||||||| |||| | Sbjct 325 AGCTGATCTCGCGCGACGAGGGGCTGCACACGGACTTCGCGTGCCTGCTGTACAACTCGC 384 Query 26048 ACTTGCTCCACAAACCTTCTCAAGAGACCGT-CTACAGTATCATCAAAGAGGCTGTGGAG 26106 || | ||||| | | | ||| ||| || || |||||| || || ||| | Sbjct 385 ACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTGGAG-ATCATCGTGGACGCGGTGAAC 443 Query 26107 ATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA 26166 |||||| ||||| | ||||||||| | || Sbjct 444 ATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAAC-GCGGA 502 Query 26167 -CTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCG 26224 || ||| || ||||| |||| || || |||| ||||| ||| | |||||| || | Sbjct 503 GCTGATGTCGCAGTACATCGAGTTCGTTGCGGACCGGCTGCTGGTGTC-GCTGGGGCTGG 561 Query 26225 CCAGACTCTACA--GT-ACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAG 26281 | | ||||| || |||| | || |||||||| ||||| | || ||| || | | Sbjct 562 AGAAGCACTACAACGTGACGC---AGCCCTTCGACTTCATGGAGATGATCTCGCTGCAGG 618 Query 26282 GGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 | ||||| |||||||| || |||| ||| ||||| || || Sbjct 619 GCAAGACGAACTTCTTCGAGAAGAAGGTTGGCGAGTACCA 658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928670258451520