Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11]
15,033 sequences; 67,441,112 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq9113 156 8e-33
seq8796 149 1e-30
seq6209 118 2e-21
>seq9113
Length=16536
Score = 156 bits (172), Expect = 8e-33
Identities = 522/803 (65%), Gaps = 21/803 (3%)
Strand=Plus/Minus
Query 221702 AGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATC 221761
||||| | | ||| ||||| ||||| || ||| ||| || |||| | |||
Sbjct 6246 AGGGCGATGGAGGCGAGGTTGCACACCGCGGTCTCCTCCGGCGACGTGTACTCCACAATC 6187
Query 221762 TCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTG 221821
|| || |||||||| |||||||||||| || |||| || || || ||||||| |||
Sbjct 6186 TCGGTGCAGAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCTGTTG 6127
Query 221822 GCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTG 221881
|||||||||||||| || || || |||| ||||| | ||| | | | ||||||
Sbjct 6126 CACGCGTCCTTGTAGAGGATGAACGGGACGCCGGTCTCGATCTGCGACTCGAGAATCGCA 6067
Query 221882 TCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCAC---CCTCGGTCTTTTCATAC 221938
||| | || ||| || || ||| ||| | | |||| | || | ||
Sbjct 6066 AACCACACCTC-CTGTGCCTGGA--TCGTCTGCACTCCGCGGCCCTCCGCCT---CGTAG 6013
Query 221939 CCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCG 221998
| ||| || || |||| || ||||| ||| ||||| || ||| ||
Sbjct 6012 CGCTCATACAGGCGCTCGAACTCCTCGCCGTAGCAGTCGCTGAGGCCCGGGCACGTGCTT 5953
Query 221999 GGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATC 222058
|| |||||| |||| | | | || || | || |||||| ||||| ||||||
Sbjct 5952 GGGTCCATCAGCGTCCACTTCCCCTCACTCTTCACGCGCTTCATGAACAGGTCGGGGATC 5893
Query 222059 CACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGA 222118
|||||||| | ||||| || | | ||||| || ||| |||| |||| | ||||
Sbjct 5892 CACAGCGCGTAGAAGAGGTCGCGCGCACGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGC 5833
Query 222119 TCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGT 222178
|| || | || ||||| |||||||||||||| || || | ||| | |||||
Sbjct 5832 AGCAGGAAGCCGAAGATGTCGGCGTGCCACGGCTCGAGGTAAATGGCGAAGGCGCCCTTG 5773
Query 222179 CGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGT 222238
||||| ||| ||||| ||||| | || |||||| | ||| || ||||
Sbjct 5772 CGCTTACCGCCGCCCTGGTCCACGTAGCGGGCCGTGTTGTTGAACACGCGCAGCATCGGC 5713
Query 222239 ACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTT- 222297
||||| ||||| || ||||| ||||| ||||| ||| ||| | | |||
Sbjct 5712 ACCAGGCCGTTCGACGTGCCGTTCGTGCCAGCGATGTAGCTGCCGGCGGAGCGGATGTTG 5653
Query 222298 ---ACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAG 222354
|| |||| |||||| || ||||| || ||| | |||||| ||| ||
Sbjct 5652 TGCACGTGCAG----GCCGATGCCGCCGGCCGCCTTGCTGATGACGGCGCACTCCTTCAG 5597
Query 222355 AGTGTCCATGATGCCCTCCATAGAGTCCTCCTT-GACGTTCAGCAGAAAACAAGACGACA 222413
||||| || || || || ||| ||||| |||| | || || || || ||
Sbjct 5596 CGTGTCGTAAATCCCGTCAATGCTGTCGTCCTTCGACG-CGACGAGGAAGCACGAGCTCA 5538
Query 222414 TCTG-AGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCC 222472
|||| | |||||| | | |||||| || || || || ||||||| || || |||||
Sbjct 5537 TCTGCGGCTTTGGT-GTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAAAAGCCC 5479
Query 222473 CTAGACATCAGATCGTACGTCTC 222495
| ||||||||||||||||||||
Sbjct 5478 TTCGACATCAGATCGTACGTCTC 5456
>seq8796
Length=7791
Score = 149 bits (164), Expect = 1e-30
Identities = 527/810 (65%), Gaps = 23/810 (3%)
Strand=Plus/Plus
Query 25522 GAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAG 25581
|| ||||| || || | ||| |||||| | | |||| | || | | | |||| |
Sbjct 6964 GAGGAGATCGACCTCGGCAACGACATGAAGGACTGGGAGAGGCTGAACGACGGGGAGCGG 7023
Query 25582 CATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAAT 25641
|| || ||||| ||||| |||| |||||||| | | || || || |||| |||||
Sbjct 7024 CACTTCATCAAGCACGTGCTGGCGTTCTTTGCCGGCAGCGACGGCATCGTGATTGAGAAC 7083
Query 25642 CTGTGCG-AGAGATTCACCAGGGAAGTGCAGTACGTGGAGGC-CAAGTGTTTCTACGGTT 25699
||| ||| || | |||| || || ||| || |||||| | | ||| |||||| |
Sbjct 7084 CTG-GCGCAGCGCTTCATGAGCGACGTGAAGGTGCCGGAGGCGCGCGCGTT-CTACGGGT 7141
Query 25700 TCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACA 25759
||||| || || || || | ||||| ||| ||| | ||| ||| |||||||
Sbjct 7142 TCCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCGGTGCTGCTGGACACGTACA 7201
Query 25760 TTACAGACGTCGCCGAGAGAGAT-CGGCTGTTTGGTGCCATCGAGCACATACCCAGCATC 25818
| || ||| || |||| || | |||||| | || ||| || || || |||||
Sbjct 7202 TCACGGACAGCGAGGAGA-AGCTGCGGCTGCTGCACGCGATCCAGACGATCCCGTGCATC 7260
Query 25819 AAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAG 25878
||| ||||||| |||||| || ||||||| ||| |||| | || |||
Sbjct 7261 CAGAAGAAGGCGGAGTGGGCTGTGCGGTGGATCGGGAGCG---GCGCGAGCTTCCAGGAG 7317
Query 25879 CGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCAT 25937
|||||| | | || || || |||||||||||||| ||| || ||||| ||| || |
Sbjct 7318 CGGCTGATCGGGTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGC-GCGCT 7376
Query 25938 CTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAG 25997
|||||||| ||| || ||| ||||| |||||| || ||||||||| |||
Sbjct 7377 GTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTC 7436
Query 25998 CAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCA 26057
| |||||||| || |||| || || || |||||||| |||| ||| | ||
Sbjct 7437 GCGCGACGAGGGGCTGCACACGGACTTCGCGTGCCTGCTGTACAACTCGCACATCAAGCA 7496
Query 26058 CAAACCTTCTCAAGAGACCGT-CTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGG 26116
||| | | | ||| ||| || || |||||| || || ||| | |||||| |
Sbjct 7497 CAAGCTGCCGCGCGAGCGCGTGCTGGAG-ATCATCGTGGACGCGGTGAACATCGAGCGCG 7555
Query 26117 AGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA-CTCATGAGC 26175
|||| | ||||||||| | || || |||
Sbjct 7556 AGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAAC-GCGGAGCTGATGTCG 7614
Query 26176 CAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTA 26234
|| ||||| |||| || || |||| ||||| ||| | |||||| || | | | |||
Sbjct 7615 CAGTACATCGAGTTCGTTGCGGACCGGCTGCTGGTGTC-GCTGGGGCTGGAGAAGCACTA 7673
Query 26235 CA--GT-ACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAA 26291
|| || |||| | || |||||||| ||||| | || ||| || | || ||||| ||
Sbjct 7674 CAACGTGACGC---AGCCCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAA 7730
Query 26292 CTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321
|||||| || |||| ||| ||||| || ||
Sbjct 7731 CTTCTTCGAGAAGAAGGTTGGCGAGTACCA 7760
>seq6209
Length=3470
Score = 118 bits (130), Expect = 2e-21
Identities = 415/640 (65%), Gaps = 19/640 (3%)
Strand=Plus/Plus
Query 25690 TTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTG 25749
|||||||| |||||| || || || || | ||||| ||| ||| | ||| |||
Sbjct 30 TTCTACGGGTTCCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCGGTGCTGCTG 89
Query 25750 ATGACGTACATTACAGACGTCGCCGAGAGAGAT-CGGCTGTTTGGTGCCATCGAGCACAT 25808
|||||||| || ||| || |||| || | |||||| | || ||| || ||
Sbjct 90 GACACGTACATCACGGACAGCGAGGAGA-AGCTGCGGCTGCTGCACGCGATCCAGACGAT 148
Query 25809 ACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTAC 25868
|| ||||| ||| ||||||| |||||| || ||||||| ||| |||| |
Sbjct 149 CCCGTGCATCCAGAAGAAGGCGGAGTGGGCTGTGCGGTGGATCGGGAGCG---GCGCGAG 205
Query 25869 GTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928
|| ||||||||| | | || || || |||||||||||||| ||| || |||||
Sbjct 206 CTTCCAGGAGCGGCTGATCGGGTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTT 265
Query 25929 -TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACG 25987
||| || | |||||||| ||| || ||| ||||| |||||| || |||||
Sbjct 266 CTGC-GCGCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACG 324
Query 25988 AGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCC 26047
|||| ||| | |||||||| || |||| || || || |||||||| |||| |
Sbjct 325 AGCTGATCTCGCGCGACGAGGGGCTGCACACGGACTTCGCGTGCCTGCTGTACAACTCGC 384
Query 26048 ACTTGCTCCACAAACCTTCTCAAGAGACCGT-CTACAGTATCATCAAAGAGGCTGTGGAG 26106
|| | ||||| | | | ||| ||| || || |||||| || || ||| |
Sbjct 385 ACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTGGAG-ATCATCGTGGACGCGGTGAAC 443
Query 26107 ATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA 26166
|||||| ||||| | ||||||||| | ||
Sbjct 444 ATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAAC-GCGGA 502
Query 26167 -CTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCG 26224
|| ||| || ||||| |||| || || |||| ||||| ||| | |||||| || |
Sbjct 503 GCTGATGTCGCAGTACATCGAGTTCGTTGCGGACCGGCTGCTGGTGTC-GCTGGGGCTGG 561
Query 26225 CCAGACTCTACA--GT-ACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAG 26281
| | ||||| || |||| | || |||||||| ||||| | || ||| || | |
Sbjct 562 AGAAGCACTACAACGTGACGC---AGCCCTTCGACTTCATGGAGATGATCTCGCTGCAGG 618
Query 26282 GGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321
| ||||| |||||||| || |||| ||| ||||| || ||
Sbjct 619 GCAAGACGAACTTCTTCGAGAAGAAGGTTGGCGAGTACCA 658
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928670258451520
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