Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq9113 131 2e-25 SEQ14990 111 1e-19 seq3668 105 6e-18 seq6451 102 7e-17 >seq9113 Length=16536 Score = 131 bits (144), Expect = 2e-25 Identities = 310/468 (66%), Gaps = 3/468 (1%) Strand=Plus/Minus Query 139398 CTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTT 139457 ||| |||||| |||||||||| || || ||||||| ||| | | | |||||||| Sbjct 5923 CTTCACGCGCTTCATGAACAGGTCGGGGATCCACAGCGCGTAGAAGAGGTCGCGCGCACG 5864 Query 139458 CTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCA 139517 || || ||| || |||| || |||| ||||| | || | ||| |||||||| Sbjct 5863 CTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAGGAAGCCGAAGATGTCGGCGTGCCA 5804 Query 139518 TGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTT---GCCACCTTGATCGACGTGTCG 139574 || || || || ||||| | ||||| || || || ||| || || || |||| || Sbjct 5803 CGGCTCGAGGTAAATGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCG 5744 Query 139575 TACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCT 139634 | | || ||||| ||||||| ||||||| |||| ||| ||| || ||||| |||| Sbjct 5743 GGCCGTGTTGTTGAACACGCGCAGCATCGGCACCAGGCCGTTCGACGTGCCGTTCGTGCC 5684 Query 139635 ACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAA 139694 | |||| ||| | | |||| || || || | | |||||| |||||| | Sbjct 5683 AGCGATGTAGCTGCCGGCGGAGCGGATGTTGTGCACGTGCAGGCCGATGCCGCCGGCCGC 5624 Query 139695 TTTGGATATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTG 139754 ||| || | |||| || | || ||||| || || ||||||||||||| Sbjct 5623 CTTGCTGATGACGGCGCACTCCTTCAGCGTGTCGTAAATCCCGTCAATGCTGTCGTCCTT 5564 Query 139755 CATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGT 139814 | || ||| || ||||| || | ||||| | |||||||| || || || Sbjct 5563 CGACGCGACGAGGAAGCACGAGCTCATCTGCGGCTTTGGTGTGCCGGCGTTGAAGAGGGT 5504 Query 139815 AGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTC 139862 || | ||||||||||| | |||||||||| |||||||| || Sbjct 5503 CGGGGTGGCGTGCGTGAAAAAGCCCTTCGACATCAGATCGTACGTCTC 5456 >SEQ14990 Length=15354 Score = 111 bits (122), Expect = 1e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || || ||| |||| || || || |||| | Sbjct 8954 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATTGCGCTGGAGGTCGAGGCCAGC 9013 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || || || || || Sbjct 9014 GACACGATCGAGAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCAG 9073 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| || || || ||||||||||| | | | | || || ||| Sbjct 9074 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 9133 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| | ||| |||| ||||||| ||| Sbjct 9134 ATCCAGAAGGAGTCGACGCTGCACCTNGTGCTGCGCCTGCGCGGTGGC 9181 >seq3668 Length=3103 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || |||||||| || || | ||||| || || || | | Sbjct 387 ATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACGATCGCCCTCGAGGTCGAGGCGAGC 328 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || || || || || Sbjct 327 GACACCATCGAGAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCAG 268 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| ||||| || ||||||||||| | | | | || || ||| Sbjct 267 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 208 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| | ||| |||| ||||||| ||| Sbjct 207 ATCCAGAAGGAGTCGACGCTGCACCTCGTGCTGCGCCTGCGCGGTGGC 160 >seq6451 Length=1481 Score = 102 bits (112), Expect = 7e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 24698 GATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAA 24757 || || |||||||||||| | || || || |||||||| || || | ||||| || || Sbjct 223 GACACCATGCAGATCTTTGTGAAGACCCTGACCGGTAAGACGATCGCCCTCGAGGTCGAG 164 Query 24758 GCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCC 24817 || | |||||| | || | || || ||||| || ||||| || || || || || Sbjct 163 GCGAGCGACACCATCGAGAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCG 104 Query 24818 GATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGAT 24877 || || || || ||||||||||||| || |||||||| || | | | | || Sbjct 103 GACCAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAAGAGGGCCGCACGCTCGCGGAC 44 Query 24878 TATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || ||||| || ||||| ||||| || ||| | ||| |||| Sbjct 43 TACAACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTGCG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449813058617240