Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq9113 307 1e-78 seq8796 104 2e-17 seq6209 104 2e-17 >seq9113 Length=16536 Score = 307 bits (340), Expect = 1e-78 Identities = 973/1474 (66%), Gaps = 43/1474 (3%) Strand=Plus/Minus Query 146866 TTAATGAGGTC-ATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACG 146924 ||||||||||| |||| | |||| || ||||| | |||||||| |||||| || Sbjct 6843 TTAATGAGGTCCATCACG-AGGTACTTGTTCACCACCGGGAACTCGCCGCTCAGCACGCG 6785 Query 146925 TCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGC 146984 | | ||| | || ||||||||||| || |||| || ||||| | ||||| | Sbjct 6784 ACGAACATAGATGTTCGAGGTGAAAGGCTCGAAGCACTCGTTGTTGCCGAGGATTTGCGA 6725 Query 146985 CGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTAC-GCACGGA 147043 || | ||||| ||||| ||| | || | || || |||| ||| | |||| | Sbjct 6724 GGTCGAGGCGGTGGGCATCGGCGCAAGCAGGAGAGAGTTGCGCATGCCGACCTGCACC-A 6666 Query 147044 TGTTGTCCTTCAAAGTTTGCCAGTCCCACAT--CGA----CGAGGGCGTCACGTTCCACA 147097 || | ||| | | | ||| |||||| || || | ||| ||||||| Sbjct 6665 CCTTCTGCTTGAGGCTGTCCCAATCCCACCGGCCGCTGTTCGGGCGCGGGTTCTTCCACA 6606 Query 147098 TGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGT 147157 ||||| |||| || | || ||||||| || ||||| ||| || |||| || | Sbjct 6605 TGTCGAACTGCAGGATGCCCTGACTGGCCGGGCTGCCCTTGAAGGTCTCGTAGGGGCCCT 6546 Query 147158 CGCGCTGCGCCAATTCACAGCTT-GCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATT 147216 | || ||||| || || | | ||| | || | |||| || |||||| ||| Sbjct 6545 CCTCCTTCGCCAGCTC-CATCGACGACTCCACGGCAGCGAAGTAGATCGTTTCGAAGATC 6487 Query 147217 TGTTTGTTTAGGACGGT-CGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGC 147275 | ||| | | || | ||| || ||| || | |||| ||||| || | ||||| Sbjct 6486 TCCGCGTTCACG-CGCTGCGCCTCAGGGCTGGCGAAGGGCAGGCGCAGCAGGATGAAGGC 6428 Query 147276 ATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGAT-GCTTTTCGTTGCTGCGCTTCG 147334 || |||| || || | || | ||||| || || | || | ||||||||| | || Sbjct 6427 GTCCGCCAGGCCTTGCACGCCCAGGCCGACCGGGCGGTTGCGCAT-GTTGCTGCGGTACG 6369 Query 147335 CGCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTT 147394 || || | | || |||| |||||| ||||| | ||| ||||| ||| | | Sbjct 6368 CGGTCTCCACCGGGTAGTAGTTGCGGTCAATGACGCGGTTCAGGTTGCGCGTGATCTGCT 6309 Query 147395 TAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGACACGT--ACGCATTG 147452 | || | | | || || | ||| | || || |||| | | | ||| | | Sbjct 6308 TCGTCACGCTGTACAGCAGCTGGTGATCG-ATCTCGCG-CTTCTCCTCATTCACGAAGCG 6251 Query 147453 GTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCA 147511 || |||||| || || || ||||| || || ||||| || |||| || |||||| || Sbjct 6250 CGGCAGGGCGATGGAGGCGAGGTTGCACACCGCGGTCTCCTCCGGCGACG-TGTACTCCA 6192 Query 147512 CGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCC 147571 | || |||| ||| ||||| ||| || ||| || | || | ||| || || | Sbjct 6191 CAATCTCGGTGCAGAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGC 6132 Query 147572 GATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGA 147631 ||||||||||| ||| |||| ||| |||| |||||||||||| |||| || | | Sbjct 6131 TGTTGCACGCGTCCTTGTAGAGGATGAACGGGACGCCGGTCTCGATCTGCGACTCGAGAA 6072 Query 147632 T---AAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGT 147688 | ||||| || ||||| || | | | |||| ||||||||| |||| Sbjct 6071 TCGCAAACCA---CACCTCCTGTGCCTGGATCGTCTGCACTCCGCGGCCCTCCGCCTCGT 6015 Query 147689 ACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACAC-TGA 147747 | ||||| |||| ||||| ||||| ||||||||||| ||| ||||| || ||| || Sbjct 6014 AGCGCTCATACAGGCGCTCGAACTCCTCGCCGTAGCAGTCGCTGAGGCCCGGGCACGTGC 5955 Query 147748 TGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGC 147807 | || | |||||||| |||| | | || || ||||| ||| ||||| || || Sbjct 5954 TTGGGTC-CATCAGCGTCCACTTCCCCTCACTCTTCACGCGCTTCATGAACAGGTCGGGG 5896 Query 147808 ACCCACAGCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTC 147867 | |||||||||||| | || |||||||| || || ||| ||||||| ||| Sbjct 5895 ATCCACAGCGCGTAGAAGAGGTCGCGCGCACGCTGGTCGTCCTTGCCGGTGTTGCGCTTC 5836 Query 147868 AAATTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCT 147927 | || | || |||||||||||||||| || || | ||| | ||| | || || Sbjct 5835 AGCAGCAGGAAGCCGAAGATGTCGGCGTGCCACGGCTCGAGGTAAATGGCGAAGGCGCCC 5776 Query 147928 TTACGCTTTCCGCC---CTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATG 147984 || ||||| ||||| |||||| || | ||| || ||||||| |||||||||| ||| Sbjct 5775 TTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCCGTGTTGTTGAACACGCGCAGCATC 5716 Query 147985 GGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACT 148044 || |||||||| ||| |||||||| ||| | ||| | ||||||| || || | Sbjct 5715 GGCACCAGGCCGTTCGACGTGCCGTTCGTGCCAGCGATGTAGCTGCCGGCGGAGCGGATG 5656 Query 148045 TCGTGCACGTTAACGCCAATGCCGCC-GCCGTACTTTGAT-ATGGCAGCGCAATCGCCCA 148102 | |||||||| | ||| |||||||| |||| | ||| | ||| | ||||| || || Sbjct 5655 TTGTGCACGTGCAGGCCGATGCCGCCGGCCG--CCTTGCTGATGACGGCGCACTCCTTCA 5598 Query 148103 ATGTCGTGTAGATGCCGTCGATGCTGTCGT-TTTTGACGCCAAGCAAAAAACACGAACAC 148161 || ||| || ||||| |||||||||| || ||||| | | | || ||||| | | Sbjct 5597 GCGTGTCGTAAATCCCGTCAATGCTGTCGTCCTTCGACGCGACG-AGGAAGCACGAGCTC 5539 Query 148162 ATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAA--TT 148219 || ||||| | | || || || ||| ||||| || | |||||||| || || Sbjct 5538 ATCTGCGGCTTTGGTGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAAAAGCCC 5479 Query 148220 TTTGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCA 148279 || || ||||| ||||||||| ||| | || |||| || |||| ||||| | Sbjct 5478 TTCGA--CATCAGATCGTACGTCTCACGCACGTTCTTGAGGTCGCCGACGTGGATGCCGA 5421 Query 148280 GCGCGACGCGCATGAGCATGTGCTGTGGTCGTTC 148313 | || ||||||| || | ||||| || ||||| Sbjct 5420 GGGCAACGCGCAGGAAGAGCTGCTGCGGGCGTTC 5387 >seq8796 Length=7791 Score = 104 bits (114), Expect = 2e-17 Identities = 349/525 (66%), Gaps = 19/525 (4%) Strand=Plus/Plus Query 46738 TGCTGAATGCGTTCGAGCACG-TGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAG 46796 ||||| | ||| || || ||| | || ||| | | || ||||| ||||||| || | Sbjct 7229 TGCTGCACGCGATCCAG-ACGATCCCGTGCATCCAGAAGAAGGCGGAGTGGGCTGTGCGG 7287 Query 46797 TGGATCGAGAGCGAGACCGCCACGCTGGCCG-AGCGCATGGTGGCATTCGCGATAGTCGA 46855 ||||||| ||||| ||| | ||| | | |||| || | | |||||| || || Sbjct 7288 TGGATCGGGAGCGG---CGCGA-GCTTCCAGGAGCGGCTGATCGGGTTCGCGGCGGTGGA 7343 Query 46856 AGGCGTGtttttttCGGGCA-GTTTTGCCGCCATTTTTTACATTAA-AACCAAAGGCATA 46913 ||| | || || ||||| ||| ||| || | || | | || || | ||| | Sbjct 7344 GGGCATCTTCTTCTCGGGGTCGTTCTGC-GCGCTGTTCTGGCTGAAGAAGCGCGGGC-TG 7401 Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 ||||| || ||||||||||| |||||| |||||||||||||||| || || ||||||||| Sbjct 7402 ATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGGCTGCACACGGAC 7461 Query 46974 TTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAA-ATTAAACTCGGACACGATCCT 47032 || ||||| || ||||| ||| | | || | || | | || | || | || Sbjct 7462 TTCGCGTGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCG-TGCT 7520 Query 47033 GAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCC 47090 | || | ||| ||||||| |||||| ||||| | ||||| |||||||| Sbjct 7521 GGAGATCATCGTGGACGCGGTGAACATCGAGCGCGAGTTCAT--CTGCGACGCGCTGCCG 7578 Query 47091 GT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGA 47149 || || | || | ||||||||||| || |||| | || || ||||| || ||||| Sbjct 7579 GTGCGGC-TGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTTGCGGA 7637 Query 47150 TCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGTT 47209 || ||| ||||| ||| || | ||| | | || | | || || || || Sbjct 7638 CCGGCTGCTGGTGTCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCCTTCGACTT 7697 Query 47210 TATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAA 47254 ||| | | || ||||| ||||||| || || || |||||||| Sbjct 7698 CATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAA 7742 >seq6209 Length=3470 Score = 104 bits (114), Expect = 2e-17 Identities = 349/525 (66%), Gaps = 19/525 (4%) Strand=Plus/Plus Query 46738 TGCTGAATGCGTTCGAGCACG-TGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAG 46796 ||||| | ||| || || ||| | || ||| | | || ||||| ||||||| || | Sbjct 127 TGCTGCACGCGATCCAG-ACGATCCCGTGCATCCAGAAGAAGGCGGAGTGGGCTGTGCGG 185 Query 46797 TGGATCGAGAGCGAGACCGCCACGCTGGCCG-AGCGCATGGTGGCATTCGCGATAGTCGA 46855 ||||||| ||||| ||| | ||| | | |||| || | | |||||| || || Sbjct 186 TGGATCGGGAGCGG---CGCGA-GCTTCCAGGAGCGGCTGATCGGGTTCGCGGCGGTGGA 241 Query 46856 AGGCGTGtttttttCGGGCA-GTTTTGCCGCCATTTTTTACATTAA-AACCAAAGGCATA 46913 ||| | || || ||||| ||| ||| || | || | | || || | ||| | Sbjct 242 GGGCATCTTCTTCTCGGGGTCGTTCTGC-GCGCTGTTCTGGCTGAAGAAGCGCGGGC-TG 299 Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 ||||| || ||||||||||| |||||| |||||||||||||||| || || ||||||||| Sbjct 300 ATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGGCTGCACACGGAC 359 Query 46974 TTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAA-ATTAAACTCGGACACGATCCT 47032 || ||||| || ||||| ||| | | || | || | | || | || | || Sbjct 360 TTCGCGTGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCG-TGCT 418 Query 47033 GAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCC 47090 | || | ||| ||||||| |||||| ||||| | ||||| |||||||| Sbjct 419 GGAGATCATCGTGGACGCGGTGAACATCGAGCGCGAGTTCAT--CTGCGACGCGCTGCCG 476 Query 47091 GT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGA 47149 || || | || | ||||||||||| || |||| | || || ||||| || ||||| Sbjct 477 GTGCGGC-TGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTTGCGGA 535 Query 47150 TCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGTT 47209 || ||| ||||| ||| || | ||| | | || | | || || || || Sbjct 536 CCGGCTGCTGGTGTCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCCTTCGACTT 595 Query 47210 TATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAA 47254 ||| | | || ||||| ||||||| || || || |||||||| Sbjct 596 CATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAA 640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476521638797880