Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11]
15,033 sequences; 67,441,112 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq9113 143 3e-29
seq3668 111 2e-19
seq6451 109 6e-19
SEQ14990 102 8e-17
seq5330 93.3 4e-14
>seq9113
Length=16536
Score = 143 bits (158), Expect = 3e-29
Identities = 246/354 (69%), Gaps = 5/354 (1%)
Strand=Plus/Plus
Query 7735 GAAGACAGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATAC 7794
|| |||||||| ||||| |||||| |||||||| || |||||| || |||
Sbjct 5567 GACGACAGCATTGACGGGATTTACGACACGCTGAAGGAGTGCGCCGTCATCAGCAAGGCG 5626
Query 7795 GGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCC 7854
| |||||| || || ||| |||| || || | ||| || ||| ||| ||||| |
Sbjct 5627 GCCGGCGGCATCGGCCTGCACGTGCACAACATCCGCTCCGCCGGCAGCTACATCGCTGGC 5686
Query 7855 ACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGA 7914
|| ||||| | | | ||| | | ||| ||| ||||||||||||| ||| ||| ||
Sbjct 5687 ACGAACGGCACGTCGAACGGCCTGGTGCCGATGCTGCGCGTGTTCAACAACACGGCCCGC 5746
Query 7915 CATGTAGACCAG---GGGGGAAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGG 7971
| || |||||| || || |||||||| |||||| ||||| || | |||||||||
Sbjct 5747 TACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCATTTACCTCGAGCCGTGG 5806
Query 7972 CACGCGGACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGA-CAGCAA 8030
||||| ||||| | || | || ||| ||||||| || || || ||||
Sbjct 5807 CACGCCGACATCTTCGGCTTCCTGCTGCTGAAGCGCAACACCGGCAAGGACGACCAGC-G 5865
Query 8031 AGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGT 8084
|||||||| || |||| || ||||| | ||||| ||||| |||| ||||||
Sbjct 5866 TGCGCGCGACCTCTTCTACGCGCTGTGGATCCCCGACCTGTTCATGAAGCGCGT 5919
>seq3668
Length=3103
Score = 111 bits (122), Expect = 2e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| |||| ||||||||| ||||| || ||||| || ||||||||||| | | ||| |
Sbjct 170 AGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGG 229
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
|| || ||||| ||||| || || |||| |||||||| || ||||| ||||| ||
Sbjct 230 CCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 289
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || ||||| || || || || | |||||| || || || ||||| |
Sbjct 290 TTGTCCTGAATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCG 349
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTTTGT 134724
|| || |||||||| | || || ||||| || ||||| ||| | |||
Sbjct 350 ATCGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCATGATGTCTGTGT 398
>seq6451
Length=1481
Score = 109 bits (120), Expect = 6e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558
|||| ||||||||| ||||| || ||||| || ||||||||||| | | ||| |
Sbjct 3 CGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 62
Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618
|| || ||||| ||||| ||||| |||| |||||||| || ||||| ||||| || ||
Sbjct 63 TCTTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 122
Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678
|| ||||| || || || || | |||||| || || || ||||| | ||
Sbjct 123 TCCTGAATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATC 182
Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| |||||||| | || || || || || |||||
Sbjct 183 GTCTTACCGGTCAGGGTCTTCACAAAGATCTGCAT 217
>SEQ14990
Length=15354
Score = 102 bits (112), Expect = 8e-17
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| |||| ||| ||||| ||||| || ||||| || ||||||||||| | | ||| |
Sbjct 9171 AGGCGCAGCACNAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGG 9112
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
|| || ||||| ||||| || || |||| |||||||| || ||||| ||||| ||
Sbjct 9111 CCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 9052
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || ||||| || || || || | |||||| | || || || || | |
Sbjct 9051 TTGTCCTGAATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCGACCTCCAGCGCA 8992
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| || ||||| | || || ||||| || |||||
Sbjct 8991 ATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 8954
>seq5330
Length=12009
Score = 93.3 bits (102), Expect = 4e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| |||| ||||||||| ||||| || ||||| || ||||||||||| | | ||| |
Sbjct 145 AGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGG 86
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
|| || ||||| ||||| || || |||| |||||||| || ||||| ||||| ||
Sbjct 85 CCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 26
Query 134616 TTTTCTTGAATTTT 134629
|| || ||||| ||
Sbjct 25 TTGTCCTGAATCTT 12
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505303429323160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |