Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq9113 143 3e-29 seq3668 111 2e-19 seq6451 109 6e-19 SEQ14990 102 8e-17 seq5330 93.3 4e-14 >seq9113 Length=16536 Score = 143 bits (158), Expect = 3e-29 Identities = 246/354 (69%), Gaps = 5/354 (1%) Strand=Plus/Plus Query 7735 GAAGACAGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATAC 7794 || |||||||| ||||| |||||| |||||||| || |||||| || ||| Sbjct 5567 GACGACAGCATTGACGGGATTTACGACACGCTGAAGGAGTGCGCCGTCATCAGCAAGGCG 5626 Query 7795 GGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCC 7854 | |||||| || || ||| |||| || || | ||| || ||| ||| ||||| | Sbjct 5627 GCCGGCGGCATCGGCCTGCACGTGCACAACATCCGCTCCGCCGGCAGCTACATCGCTGGC 5686 Query 7855 ACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGA 7914 || ||||| | | | ||| | | ||| ||| ||||||||||||| ||| ||| || Sbjct 5687 ACGAACGGCACGTCGAACGGCCTGGTGCCGATGCTGCGCGTGTTCAACAACACGGCCCGC 5746 Query 7915 CATGTAGACCAG---GGGGGAAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGG 7971 | || |||||| || || |||||||| |||||| ||||| || | ||||||||| Sbjct 5747 TACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCATTTACCTCGAGCCGTGG 5806 Query 7972 CACGCGGACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGA-CAGCAA 8030 ||||| ||||| | || | || ||| ||||||| || || || |||| Sbjct 5807 CACGCCGACATCTTCGGCTTCCTGCTGCTGAAGCGCAACACCGGCAAGGACGACCAGC-G 5865 Query 8031 AGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGT 8084 |||||||| || |||| || ||||| | ||||| ||||| |||| |||||| Sbjct 5866 TGCGCGCGACCTCTTCTACGCGCTGTGGATCCCCGACCTGTTCATGAAGCGCGT 5919 >seq3668 Length=3103 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||||||||| ||||| || ||||| || ||||||||||| | | ||| | Sbjct 170 AGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGG 229 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || |||| |||||||| || ||||| ||||| || Sbjct 230 CCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 289 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || || || || | |||||| || || || ||||| | Sbjct 290 TTGTCCTGAATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCG 349 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTTTGT 134724 || || |||||||| | || || ||||| || ||||| ||| | ||| Sbjct 350 ATCGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCATGATGTCTGTGT 398 >seq6451 Length=1481 Score = 109 bits (120), Expect = 6e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 |||| ||||||||| ||||| || ||||| || ||||||||||| | | ||| | Sbjct 3 CGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 62 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || ||||| ||||| ||||| |||| |||||||| || ||||| ||||| || || Sbjct 63 TCTTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 122 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 || ||||| || || || || | |||||| || || || ||||| | || Sbjct 123 TCCTGAATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATC 182 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || |||||||| | || || || || || ||||| Sbjct 183 GTCTTACCGGTCAGGGTCTTCACAAAGATCTGCAT 217 >SEQ14990 Length=15354 Score = 102 bits (112), Expect = 8e-17 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| ||||| || ||||| || ||||||||||| | | ||| | Sbjct 9171 AGGCGCAGCACNAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGG 9112 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || |||| |||||||| || ||||| ||||| || Sbjct 9111 CCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 9052 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || || || || | |||||| | || || || || | | Sbjct 9051 TTGTCCTGAATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCGACCTCCAGCGCA 8992 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| | || || ||||| || ||||| Sbjct 8991 ATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 8954 >seq5330 Length=12009 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||||||||| ||||| || ||||| || ||||||||||| | | ||| | Sbjct 145 AGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGG 86 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || |||| |||||||| || ||||| ||||| || Sbjct 85 CCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 26 Query 134616 TTTTCTTGAATTTT 134629 || || ||||| || Sbjct 25 TTGTCCTGAATCTT 12 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505303429323160