Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq9113 100 9e-16 seq8796 87.8 6e-12 seq6209 87.8 6e-12 >seq9113 Length=16536 Score = 100 bits (110), Expect = 9e-16 Identities = 168/242 (69%), Gaps = 1/242 (0%) Strand=Plus/Plus Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040 || ||| | || |||||||||||| ||| |||||||| || || || ||||| || ||| Sbjct 5714 CCGATGCTGCGCGTGTTCAACAACACGGCCCGCTACGTGGACCAGGGCGGCGGTAAGCGC 5773 Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACGGTTTTTACTG 255100 || || ||| |||| ||||| |||||||||||||||||||| | || | ||| Sbjct 5774 AAGGGCGCCTTCGCCATTTACCTCGAGCCGTGGCACGCCGACATCTTCGGCTTCCTGCTG 5833 Query 255101 CTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTGTCTGG 255160 ||| ||| ||||||| || || | | || |||||| ||| | ||| | ||| Sbjct 5834 CTGAAGCGCAACACCGGCAAGGACGACCAGCGTGCGCGCGACCTCTTCTACGCGCTGTGG 5893 Query 255161 TGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGAGACCTGGAGCCTCATGTGTCCC 255220 | ||| ||||| ||| |||||| | | || | || |||| || ||| | ||| Sbjct 5894 ATCCCCGACCTGTTCATGAAGCGCGTGAAGAGTGAGGGGAAGTGGACGCTGATG-GACCC 5952 Query 255221 AA 255222 || Sbjct 5953 AA 5954 Score = 86.0 bits (94), Expect = 2e-11 Identities = 204/306 (67%), Gaps = 2/306 (1%) Strand=Plus/Plus Query 256143 TGCGCAACTCGCAACGATTGGCGCCCATGCCAACCGCCAGCACCGCTCAAATCCTGGGTA 256202 |||||||||| | | | ||||| ||||| |||||| ||| | |||||||| || | Sbjct 6681 TGCGCAACTCTCTCCTGCTTGCGCCGATGCCCACCGCCTCGACCTCGCAAATCCTCGGCA 6740 Query 256203 ACGTGGAAAGCATCGAACCCCTGACTACCAACTTCTTCTCGCGCCGCGTTCGCTCCGGCG 256262 || || || |||| || | || | ||| ||| || ||||| | ||||| Sbjct 6741 ACAACGAGTGCTTCGAGCCTTTCACCTCGAACATCTATGTTCGTCGCGTGCTGAGCGGCG 6800 Query 256263 AGTTCGCCGTGGTGAACCAGTACTTGGTGGACGACTTGGTACGACTCGGTCTGTGGAACG 256322 ||||| | ||||||||| ||||| | ||| ||| | | | ||| |||||||| | Sbjct 6801 AGTTCCCGGTGGTGAACAAGTACCTCGTGATGGACCTCATTAAGCGCGGCCTGTGGAATG 6860 Query 256323 AGAAGATGCAACAACGC-ATAATTCGGGCCCGTGGGTCGGTGCAGAACATTGAGCGCTTG 256381 ||| ||||| ||||| || || | || || |||| || ||| || || | Sbjct 6861 AGACGATGCG-CAACGAGATCATCTCCTACAACGGCTCCGTGCTGACCATCGACAGCATC 6919 Query 256382 CCGTTCCGCTTGCGCGAGGTATACCGCACGGTATGGGAGATGCCGCAACGATTGTTGGTC 256441 ||| | | || ||| | ||||||||||| |||||||| ||||| || | || || Sbjct 6920 CCGGACGACCTGAAGGAGCTGTACCGCACGGTGTGGGAGATCCCGCAGCGCAAGCTGATC 6979 Query 256442 GACTTG 256447 ||| || Sbjct 6980 GACATG 6985 >seq8796 Length=7791 Score = 87.8 bits (96), Expect = 6e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 443770 TTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGT 443829 |||||| |||| ||||| || || |||| || ||||| || || ||||| |||||| Sbjct 7378 TTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCG 7437 Query 443830 CGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCAAACACATCGTGCAC 443889 || |||||||| |||| |||||||| || || || |||| | |||||| |||| Sbjct 7438 CGCGACGAGGGGCTGCACACGGACTTCGCGTGCCTGCTGTACAACTCGCACATCAAGCAC 7497 Query 443890 AAGCTGCC 443897 |||||||| Sbjct 7498 AAGCTGCC 7505 >seq6209 Length=3470 Score = 87.8 bits (96), Expect = 6e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 443770 TTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGT 443829 |||||| |||| ||||| || || |||| || ||||| || || ||||| |||||| Sbjct 276 TTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCG 335 Query 443830 CGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCAAACACATCGTGCAC 443889 || |||||||| |||| |||||||| || || || |||| | |||||| |||| Sbjct 336 CGCGACGAGGGGCTGCACACGGACTTCGCGTGCCTGCTGTACAACTCGCACATCAAGCAC 395 Query 443890 AAGCTGCC 443897 |||||||| Sbjct 396 AAGCTGCC 403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588030070106685