Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq9113 104 3e-17 seq471 93.3 5e-14 SEQ14946 82.4 1e-10 SEQ13316 82.4 1e-10 >seq9113 Length=16536 Score = 104 bits (114), Expect = 3e-17 Identities = 549/868 (63%), Gaps = 9/868 (1%) Strand=Plus/Minus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || |||||||| || || | ||||| || || ||||| ||| |||||||| | | Sbjct 6249 GGCAGGGCGATGGAGGCGAGGTTGCACACCGCGGTCTCCTCCGGCGACGTGTACTCCACA 6190 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || || || | ||| || | ||| || || || | ||||| ||||| ||| || Sbjct 6189 ATCTCGGTGCAGAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCTG 6130 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 |||||||| ||||||||||| ||| | || || ||||| |||| || | |||||| Sbjct 6129 TTGCACGCGTCCTTGTAGAGGATGAACGGGACGCCGGTCTCGATCTGCGACTCGAGAATC 6070 Query 111410 GCCTTCCAAACAT-CGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTT 111468 || ||| || | | | | |||| | || | | || |||||||||||||| Sbjct 6069 GCAAACCACACCTCCTGTGCCTGGATCGTCTGCACT-CCGCGGCCCTCCGCCTCGTAGCG 6011 Query 111469 TGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGG 111528 || ||| || |||||||| || |||| ||| || || | || ||| Sbjct 6010 CTCATACAGGCGCTCGAACTCCTCGCCGTAGCAGTCGCTGAGGCCCGGGCACGTGCTTGG 5951 Query 111529 ACAGAAAAGAGACCA-TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC 111587 | || | ||| || || | || || || ||||||||||| ||||| || |||| Sbjct 5950 GTCCATCAGCGTCCACTTCCCCTCACTCTTC-ACGCGCTTCATGAACAGGTCGGGGATCC 5892 Query 111588 ACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACT 111647 |||| | | ||||| || | || || || | || |||| | | | Sbjct 5891 ACAGCGCGTAGAAGAGGTCGCGCGCACGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCA 5832 Query 111648 CAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTC 111707 ||||| | | ||| || |||||||| ||||| || || | |||| | ||||| | Sbjct 5831 GCAGGAAGCCGAAGATGTCGGCGTGCCACGGCTCGAGGTAAATGGCGAAGGCGCCCTTGC 5772 Query 111708 G---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAA 111764 | || || | || | || ||||| || ||| ||| || ||||| ||||| || | Sbjct 5771 GCTTACCGCCGCCCTGGTCCACGTAGCGGGCCGTGTTGTTGAACACGCGCAGCATCGGCA 5712 Query 111765 TAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCA 111823 | || | || || || || || || || | || | | | Sbjct 5711 CCAGGCCGTTCGACGTGCCGTTCGTGCCAGCGAT-GTAGCTGCCGGCGGAGCGGATGTTG 5653 Query 111824 TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTT 111883 || | ||||| || || || || ||| ||| ||| || |||||| | || || Sbjct 5652 TGCACGTGCAGGCCGATGCCGCCGGCCGCCTTGCTGATGACGGCGCACTCCTTCAGCGTG 5593 Query 111884 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 111943 | || || |||| || ||| ||||| |||| |||||||| | ||||||| Sbjct 5592 TCGTAAATCCCGTCAATGCTGTCGTCCTTCGACGCGACGAGGAAGCACGAGCTCATCTGC 5533 Query 111944 GGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGAC 112003 || ||||||| || || ||||||||||| || || ||||| |||| | || | ||| Sbjct 5532 GGCTTTGGTGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAAAAGCCCTTCGAC 5473 Query 112004 ATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACC 112063 ||| ||||| ||||| || | | ||| | |||||||||||| || || Sbjct 5472 ATCAGATCGTACGTCTCACGCACGTTCTTGAGGTCGCCGACGTGGATGCCGAGGGCAACG 5413 Query 112064 CGCATGAACATGTACTGTGGGGTTTCCA 112091 |||| ||| | | ||| ||| ||||| Sbjct 5412 CGCAGGAAGAGCTGCTGCGGGCGTTCCA 5385 >seq471 Length=10936 Score = 93.3 bits (102), Expect = 5e-14 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||||||| ||||||||||||||||||||| ||||| ||||| |||| Sbjct 9 GCTCCTATAGTGTAGTGGTTATCACTTTGGACTTTGAATCCGGAAACCCAGGTTCGAATC 68 Query 145342 CAGGTAGGAGC 145352 | ||||||||| Sbjct 69 CTGGTAGGAGC 79 >SEQ14946 Length=22304 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 1111 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 1052 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 1051 CAGGTAGGAG 1042 >SEQ13316 Length=16878 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 12748 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 12689 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 12688 CAGGTAGGAG 12679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627913984936800