Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq8796 105 8e-18 seq6209 105 8e-18 >seq8796 Length=7791 Score = 105 bits (116), Expect = 8e-18 Identities = 185/267 (69%), Gaps = 3/267 (1%) Strand=Plus/Plus Query 94678 GACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTT 94737 |||| ||| || | ||| | | |||||| || ||| | | || ||||| || | Sbjct 7192 GACACGTACATCACGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGATC 7251 Query 94738 CCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCC 94797 ||||| || || ||||| ||||| |||||| || |||| | | | | |||| | Sbjct 7252 CCGTGCATCCAGAAGAAGGCGGAGTGGGCTGTGCGGTGGATCGGGAGC--GGCGCGAGC- 7308 Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 || ||||| || ||| || ||| || ||||| ||||||||||| || || ||| Sbjct 7309 TTCCAGGAGCGGCTGATCGGGTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTC 7368 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 ||||| | | ||||| |||||||| || || ||||| || || ||| ||||||| Sbjct 7369 TGCGCGCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAG 7428 Query 94918 CTTATCTCTCGTGACGAGGGACTCCAC 94944 || ||||| || |||||||| || ||| Sbjct 7429 CTGATCTCGCGCGACGAGGGGCTGCAC 7455 >seq6209 Length=3470 Score = 105 bits (116), Expect = 8e-18 Identities = 185/267 (69%), Gaps = 3/267 (1%) Strand=Plus/Plus Query 94678 GACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTT 94737 |||| ||| || | ||| | | |||||| || ||| | | || ||||| || | Sbjct 90 GACACGTACATCACGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGATC 149 Query 94738 CCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCC 94797 ||||| || || ||||| ||||| |||||| || |||| | | | | |||| | Sbjct 150 CCGTGCATCCAGAAGAAGGCGGAGTGGGCTGTGCGGTGGATCGGGAGC--GGCGCGAGC- 206 Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 || ||||| || ||| || ||| || ||||| ||||||||||| || || ||| Sbjct 207 TTCCAGGAGCGGCTGATCGGGTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTC 266 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 ||||| | | ||||| |||||||| || || ||||| || || ||| ||||||| Sbjct 267 TGCGCGCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAG 326 Query 94918 CTTATCTCTCGTGACGAGGGACTCCAC 94944 || ||||| || |||||||| || ||| Sbjct 327 CTGATCTCGCGCGACGAGGGGCTGCAC 353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583151198004920