Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11]
15,033 sequences; 67,441,112 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
SEQ10917 87.8 5e-12
SEQ10916 87.8 5e-12
seq6074 87.8 5e-12
seq3766 87.8 5e-12
>SEQ10917
Length=13997
Score = 87.8 bits (96), Expect = 5e-12
Identities = 152/220 (69%), Gaps = 1/220 (0%)
Strand=Plus/Plus
Query 349198 CGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCG 349257
|||||| || || ||| | || || || || || || || | || | | || ||||
Sbjct 11159 CGCTATTGGTATTGATCTGGGCACGACGTACTCGTGCGTCGGCGTCTTCAAGAACGATCA 11218
Query 349258 TGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTAC 349317
|| || || || || || || || |||||| | || ||||| || ||||| || || ||
Sbjct 11219 GGTGGAGATCATCGCGAACGACCAGGGTAACCGCACCACGCCGTCGTACGTGGCCTTCAC 11278
Query 349318 CGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAA 349377
||| | ||||| | | || ||| | || || || || | ||| || || | ||
Sbjct 11279 CGAGTCGGAGCGCCTCGTCGGCGATGCCGCGAAGAACCAGGTTGCGATGAACCCGCACAA 11338
Query 349378 TACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT 349416
||||||||||||||| ||||| | |||||| | ||||||
Sbjct 11339 TACGGTTTTTGATGCAAAGCGCATGATTGGTCGCAAGTTT 11378
>SEQ10916
Length=13997
Score = 87.8 bits (96), Expect = 5e-12
Identities = 152/220 (69%), Gaps = 1/220 (0%)
Strand=Plus/Plus
Query 349198 CGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCG 349257
|||||| || || ||| | || || || || || || || | || | | || ||||
Sbjct 11159 CGCTATTGGTATTGATCTGGGCACGACGTACTCGTGCGTCGGCGTCTTCAAGAACGATCA 11218
Query 349258 TGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTAC 349317
|| || || || || || || || |||||| | || ||||| || ||||| || || ||
Sbjct 11219 GGTGGAGATCATCGCGAACGACCAGGGTAACCGCACCACGCCGTCGTACGTGGCCTTCAC 11278
Query 349318 CGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAA 349377
||| | ||||| | | || ||| | || || || || | ||| || || | ||
Sbjct 11279 CGAGTCGGAGCGCCTCGTCGGCGATGCCGCGAAGAACCAGGTTGCGATGAACCCGCACAA 11338
Query 349378 TACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT 349416
||||||||||||||| ||||| | |||||| | ||||||
Sbjct 11339 TACGGTTTTTGATGCAAAGCGCATGATTGGTCGCAAGTTT 11378
>seq6074
Length=5408
Score = 87.8 bits (96), Expect = 5e-12
Identities = 152/220 (69%), Gaps = 1/220 (0%)
Strand=Plus/Minus
Query 349198 CGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCG 349257
|||||| || || ||| | || || || || || || || | || | | || ||||
Sbjct 3510 CGCTATTGGTATTGATCTGGGCACGACGTACTCGTGCGTCGGCGTCTTCAAGAACGATCA 3451
Query 349258 TGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTAC 349317
|| || || || || || || || |||||| | || ||||| || ||||| || || ||
Sbjct 3450 GGTGGAGATCATCGCGAACGACCAGGGTAACCGCACCACGCCGTCGTACGTGGCCTTCAC 3391
Query 349318 CGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAA 349377
||| | ||||| | | || ||| | || || || || | ||| || || | ||
Sbjct 3390 CGAGTCGGAGCGCCTCGTCGGCGATGCCGCGAAGAACCAGGTTGCGATGAACCCGCACAA 3331
Query 349378 TACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT 349416
||||||||||||||| ||||| | |||||| | ||||||
Sbjct 3330 TACGGTTTTTGATGCAAAGCGCATGATTGGTCGCAAGTTT 3291
>seq3766
Length=5324
Score = 87.8 bits (96), Expect = 5e-12
Identities = 152/220 (69%), Gaps = 1/220 (0%)
Strand=Plus/Minus
Query 349198 CGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCG 349257
|||||| || || ||| | || || || || || || || | || | | || ||||
Sbjct 3426 CGCTATTGGTATTGATCTGGGCACGACGTACTCGTGCGTCGGCGTCTTCAAGAACGATCA 3367
Query 349258 TGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTAC 349317
|| || || || || || || || |||||| | || ||||| || ||||| || || ||
Sbjct 3366 GGTGGAGATCATCGCGAACGACCAGGGTAACCGCACCACGCCGTCGTACGTGGCCTTCAC 3307
Query 349318 CGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAA 349377
||| | ||||| | | || ||| | || || || || | ||| || || | ||
Sbjct 3306 CGAGTCGGAGCGCCTCGTCGGCGATGCCGCGAAGAACCAGGTTGCGATGAACCCGCACAA 3247
Query 349378 TACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT 349416
||||||||||||||| ||||| | |||||| | ||||||
Sbjct 3246 TACGGTTTTTGATGCAAAGCGCATGATTGGTCGCAAGTTT 3207
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1514962546376499
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |