Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value SEQ10917 87.8 5e-12 SEQ10916 87.8 5e-12 seq6074 87.8 5e-12 seq3766 87.8 5e-12 >SEQ10917 Length=13997 Score = 87.8 bits (96), Expect = 5e-12 Identities = 152/220 (69%), Gaps = 1/220 (0%) Strand=Plus/Plus Query 349198 CGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCG 349257 |||||| || || ||| | || || || || || || || | || | | || |||| Sbjct 11159 CGCTATTGGTATTGATCTGGGCACGACGTACTCGTGCGTCGGCGTCTTCAAGAACGATCA 11218 Query 349258 TGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTAC 349317 || || || || || || || || |||||| | || ||||| || ||||| || || || Sbjct 11219 GGTGGAGATCATCGCGAACGACCAGGGTAACCGCACCACGCCGTCGTACGTGGCCTTCAC 11278 Query 349318 CGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAA 349377 ||| | ||||| | | || ||| | || || || || | ||| || || | || Sbjct 11279 CGAGTCGGAGCGCCTCGTCGGCGATGCCGCGAAGAACCAGGTTGCGATGAACCCGCACAA 11338 Query 349378 TACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT 349416 ||||||||||||||| ||||| | |||||| | |||||| Sbjct 11339 TACGGTTTTTGATGCAAAGCGCATGATTGGTCGCAAGTTT 11378 >SEQ10916 Length=13997 Score = 87.8 bits (96), Expect = 5e-12 Identities = 152/220 (69%), Gaps = 1/220 (0%) Strand=Plus/Plus Query 349198 CGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCG 349257 |||||| || || ||| | || || || || || || || | || | | || |||| Sbjct 11159 CGCTATTGGTATTGATCTGGGCACGACGTACTCGTGCGTCGGCGTCTTCAAGAACGATCA 11218 Query 349258 TGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTAC 349317 || || || || || || || || |||||| | || ||||| || ||||| || || || Sbjct 11219 GGTGGAGATCATCGCGAACGACCAGGGTAACCGCACCACGCCGTCGTACGTGGCCTTCAC 11278 Query 349318 CGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAA 349377 ||| | ||||| | | || ||| | || || || || | ||| || || | || Sbjct 11279 CGAGTCGGAGCGCCTCGTCGGCGATGCCGCGAAGAACCAGGTTGCGATGAACCCGCACAA 11338 Query 349378 TACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT 349416 ||||||||||||||| ||||| | |||||| | |||||| Sbjct 11339 TACGGTTTTTGATGCAAAGCGCATGATTGGTCGCAAGTTT 11378 >seq6074 Length=5408 Score = 87.8 bits (96), Expect = 5e-12 Identities = 152/220 (69%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 349198 CGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCG 349257 |||||| || || ||| | || || || || || || || | || | | || |||| Sbjct 3510 CGCTATTGGTATTGATCTGGGCACGACGTACTCGTGCGTCGGCGTCTTCAAGAACGATCA 3451 Query 349258 TGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTAC 349317 || || || || || || || || |||||| | || ||||| || ||||| || || || Sbjct 3450 GGTGGAGATCATCGCGAACGACCAGGGTAACCGCACCACGCCGTCGTACGTGGCCTTCAC 3391 Query 349318 CGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAA 349377 ||| | ||||| | | || ||| | || || || || | ||| || || | || Sbjct 3390 CGAGTCGGAGCGCCTCGTCGGCGATGCCGCGAAGAACCAGGTTGCGATGAACCCGCACAA 3331 Query 349378 TACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT 349416 ||||||||||||||| ||||| | |||||| | |||||| Sbjct 3330 TACGGTTTTTGATGCAAAGCGCATGATTGGTCGCAAGTTT 3291 >seq3766 Length=5324 Score = 87.8 bits (96), Expect = 5e-12 Identities = 152/220 (69%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 349198 CGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCG 349257 |||||| || || ||| | || || || || || || || | || | | || |||| Sbjct 3426 CGCTATTGGTATTGATCTGGGCACGACGTACTCGTGCGTCGGCGTCTTCAAGAACGATCA 3367 Query 349258 TGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTAC 349317 || || || || || || || || |||||| | || ||||| || ||||| || || || Sbjct 3366 GGTGGAGATCATCGCGAACGACCAGGGTAACCGCACCACGCCGTCGTACGTGGCCTTCAC 3307 Query 349318 CGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAA 349377 ||| | ||||| | | || ||| | || || || || | ||| || || | || Sbjct 3306 CGAGTCGGAGCGCCTCGTCGGCGATGCCGCGAAGAACCAGGTTGCGATGAACCCGCACAA 3247 Query 349378 TACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT 349416 ||||||||||||||| ||||| | |||||| | |||||| Sbjct 3246 TACGGTTTTTGATGCAAAGCGCATGATTGGTCGCAAGTTT 3207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514962546376499