Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq9113 288 1e-72 >seq9113 Length=16536 Score = 288 bits (318), Expect = 1e-72 Identities = 546/785 (70%), Gaps = 24/785 (3%) Strand=Plus/Plus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 || ||| | || ||| ||||||| ||| | || ||||||| | |||| || | || Sbjct 5393 CCGCAGCAGCTCTTCCTGCGCGTTGCCCTCGGCATCCACGTCGGCGACCTCAAGAACGTG 5452 Query 53240 CGTGAGACGTACGACTTAATGAGCCAAAAGTACTTT-ACGCACGCCACGCCAACCCTGTT 53298 |||||||||||||| | ||| | || | ||| ||||||||||| || ||||| || Sbjct 5453 CGTGAGACGTACGATCTGATGT-CGAAGGGCTTTTTCACGCACGCCACCCCGACCCTCTT 5511 Query 53299 CAACGCTGGTACGAATCACCCTCAGATGTCGAGCT---GCTTCCTGGTGGCGATGAAGGA 53355 |||||| || || | || |||||| |||| ||||||| || ||| |||||| Sbjct 5512 CAACGCCGGCACACCAAAGCCGCAGATG---AGCTCGTGCTTCCTCGTCGCGTCGAAGGA 5568 Query 53356 TGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTC 53415 ||| || ||||| || ||||| ||||| |||||||| ||| |||| |||| | | Sbjct 5569 CGACAGCATTGACGGGATTTACGACACGCTGAAGGAGTGCGCCGTCATCAGCAAGGCGGC 5628 Query 53416 GGGTGGTATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGA 53474 || || ||||| | ||| ||| | ||| |||| | ||||| ||| || | Sbjct 5629 CGGCGGCATCGGCCTGCACGTGCAC-AACATCCGCTCCGCCGGCAGCTACATCGCTGGCA 5687 Query 53475 CGAACGGCGTCGCCGAT-GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGG 53533 |||||||| || ||| || | ||||| ||||| ||||| ||||||||||||||||| Sbjct 5688 CGAACGGCA-CGTCGAACGGCCTGGTGCCGATGCTGCGCGTGTTCAACAACACGGCCCGC 5746 Query 53534 TACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGG 53593 ||||| ||||||| || || ||||||||||| | |||||||| ||||||||||||||| Sbjct 5747 TACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCATTTACCTCGAGCCGTGG 5806 Query 53594 CACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGC 53653 ||||||||||| | | || || |||| | || || | || || ||| Sbjct 5807 CACGCCGACATCTTCGGCTTCCTGCTGCTGAAGCGCAACACCGGCAAGGACGACCAGCG- 5865 Query 53654 TGC-CGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGA 53711 ||| || ||||| || ||| || |||||||| || ||||| |||||| | ||| ||| Sbjct 5866 TGCGCGCGACCTCTTCTAC-GCGCTGTGGATCCCCGACCTGTTCATGAAGCGCGTGAAGA 5924 Query 53712 AGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGT-CTAC 53770 || | | ||||| |||||| ||| | | |||||| ||||| ||| | | |||| Sbjct 5925 GTGAGGGGAAGTGGACGCTGATGGACCCAAGCACGTGCCCGGGCCT-CAGCGACTGCTAC 5983 Query 53771 GGTGAGGAGTTTAACGAG---ATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAG 53827 || |||||||| |||| ||||| | |||| | |||||||| | || Sbjct 5984 GGCGAGGAGTT---CGAGCGCCTGTATGAGCGCTACGAGGCGGAGGGCCGCGGAGTGCAG 6040 Query 53828 AAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACG 53887 | | || |||| | ||||| ||| ||| || ||| || ||| | ||||| || Sbjct 6041 ACGATCCAGGCACAGGAGGTGTGGTTTGCGATTCTCGAGTCGCAGATCGAGACCGGCGTC 6100 Query 53888 CCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTC 53947 |||| ||| ||||||||| || |||| ||| |||||||||||| ||||| | Sbjct 6101 CCGTTCATCCTCTACAAGGACGCGTGCAACAGCAAGTCGAACCAGAAGAACCTCGGCACC 6160 Query 53948 ATCAA 53952 ||||| Sbjct 6161 ATCAA 6165 Score = 138 bits (152), Expect = 1e-27 Identities = 307/452 (68%), Gaps = 9/452 (2%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||||| || || | ||||| ||||| ||||| ||||| | || ||| | Sbjct 6677 GGCATGCGCAACTCTCTCCTGCTTGCGCCGATGCCCACCGCCTCGACCTCGCAAATCCTC 6736 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCT-AGC 55596 |||||||||||| |||||||| | ||| | |||||||| | || || || ||| Sbjct 6737 GGCAACAACGAGTGCTTCGAGCCTTTCACCTCGAACATCTATGTTCGTCGCGTGCTGAGC 6796 Query 55597 AGGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTG 55656 || ||||| || | |||||| ||||||| | |||||| ||| | | ||| Sbjct 6797 -GGCGAGTTCCCGGTGGTGAACAAGTACCTCGTGATGGACCTCATTAAGCGCGGCCTGTG 6855 Query 55657 GAACCCGCAGAT-CAAGACG-GATATTGTGCGGAACGGGGGGTCCGTCCAGA--ATCTGG 55712 ||| | ||| | ||| ||| | | | || || ||||| | || ||| Sbjct 6856 GAATGAGACGATGCGCAACGAGATCATCTCCT--ACAACGGCTCCGTGCTGACCATCGAC 6913 Query 55713 AGATTCCTCTGCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGT 55771 || ||| || | | |||||| | ||||| |||||||||||||| || ||| | Sbjct 6914 AGCATCCCGGACGACCTGAAGGAGCTGTACCGCACGGTGTGGGAGATCCCGCAGCGCAAG 6973 Query 55772 CTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATC 55831 ||||| |||||| || || || |||||| |||||||||||||| |||||| || Sbjct 6974 CTGATCGACATGGCCCGCGACCGCGGCCAGTACATTGACCAGTCCCAGTCGCTGAACCTC 7033 Query 55832 TTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAG 55891 ||| || | | || | || | || | | ||||||| ||| ||| |||| || | Sbjct 7034 TTCCTGCAAAGCCCCACCTCGGGCCAGATCACGTCGATGCTCTTCTACACGTGGGAGTCG 7093 Query 55892 GGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 || || ||||||||| ||||||| ||||| || Sbjct 7094 GGTCTGAAGACGGGTGTGTACTACCTGCGCAC 7125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547113171273400