Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq9113 221 1e-52 SEQ14990 167 3e-36 seq3668 149 7e-31 seq6451 140 4e-28 seq5330 114 1e-20 seq8796 98.7 1e-15 seq6209 98.7 1e-15 SEQ11735 84.2 2e-11 SEQ11734 84.2 2e-11 >seq9113 Length=16536 Score = 221 bits (244), Expect = 1e-52 Identities = 765/1174 (65%), Gaps = 47/1174 (4%) Strand=Plus/Minus Query 80541 CCACATGTCGTGCTGCAAGATGCCCTCCGAC--GCCGGAGACCCCGCGAACGTCTCGTAC 80598 |||||||||| ||||| |||||||| ||| ||||| ||| ||| |||||||| Sbjct 6610 CCACATGTCGAACTGCAGGATGCCCT--GACTGGCCGGGCTGCCCTTGAAGGTCTCGTAG 6553 Query 80599 GGGCCCTCCGTCTTGGCCAGCTCAC---ACGACTCCATAAGGGCCGCGTGATAAATGCAC 80655 ||||||||| ||| |||||||| ||||||||| ||| ||| || || Sbjct 6552 GGGCCCTCCTCCTTCGCCAGCTCCATCGACGACTCCAC---GGCAGCGAAGTAGATCGTT 6496 Query 80656 TCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATC 80715 || |||| || |||||| | |||||| ||| | |||| | || || || || Sbjct 6495 TCGAAGATCTCCGCGTTCACGCGCTGCGCCTCAGGGCTGGCGAAGGGCAGGCGCAGCAGG 6436 Query 80716 ATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGAT 80775 ||||| |||| |||||||| || ||||| | | ||| |||||||| |||| |||| Sbjct 6435 ATGAAGGCGTCCGCCAGGCCTTGCACGCCCAGGCCGACCGGGCGGTTGCGCATGTTGCTG 6376 Query 80776 CGCT---CGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGT 80832 || | ||| |||| | ||||| |||| || |||||||||||||||||||| Sbjct 6375 CGGTACGCGGTCTCC---ACCGGGTAGTAGTTGCGGTCAATGACGCGGTTCAGGTTGCGC 6319 Query 80833 GTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATT---GGTTCCCC---TTC 80886 || | | || || | || ||| |||| | | ||| || ||| Sbjct 6318 GTGATCTGCTTCGTCACGCTGTACAGCAGCTGGTGATCGATCTCGCGCTTCTCCTCATTC 6259 Query 80887 ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTA 80946 || || ||| ||| | ||| || || |||||||| || ||| || | || Sbjct 6258 ACGAAGCGCGGCAGGGCGATGGAGGCGAGGTTGCACACCGCGGTCTCCTCCGGCGACGTG 6199 Query 80947 AACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTT 81006 |||| || || || ||||| | || || |||| || || || ||||| |||||||| Sbjct 6198 TACTCCACAATCTCGGTGCAGAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTC 6139 Query 81007 GACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGAC 81066 |||||| |||||| |||||||||||| ||| ||||| |||||||||| ||| ||| Sbjct 6138 GACTTGCTGTTGCACGCGTCCTTGTAGAGGATGAACGGGACGCCGGTCTCGATCTGCGAC 6079 Query 81067 TTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAAT---TTGCCTTCG 81123 | ||| || || ||| | ||| | |||| || | || | | | ||| || Sbjct 6078 TCGAGAATCGCAAACCACACCTCCTGTGCCTGGATCGTCT---GCACTCCGCGGCCCTCC 6022 Query 81124 GCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTG 81181 ||| | || | || || | ||||||| | |||| | || || ||||| | | Sbjct 6021 GCCTCGTAGCGCTCATACAGGCGC-TCGAACTCCTCGCCGTAGCAG-TCGCTGAGGCCCG 5964 Query 81182 GGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAG 81241 ||||| | | ||| |||||| ||| | || ||| || ||||||||| Sbjct 5963 GGCACGTGCTTGGGTCCATCAGCGTCCACTTCCCCTCACTCTTCACGCGCTTCATGAACA 5904 Query 81242 CGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGG 81300 ||| |||||||| || ||| ||| |||||||| ||| ||| || || | || | Sbjct 5903 GGTCGGGGATCCACAGCGCGTAGAAGAGGTCGCGCGCA-CGCTGGTCGTCCTTGCCGGTG 5845 Query 81301 TTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCG 81360 ||| | || | || ||| | | |||||| || ||||| ||||| || || | |||| Sbjct 5844 TTGCGCTTCAGCAGCAGGAAGCCGAAGATGTCGGCGTGCCACGGCTCGAGGTAAATGGCG 5785 Query 81361 ATCGACCCCTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACA 81417 | | |||||||| || ||| ||||||| ||||| ||||| || ||| || || Sbjct 5784 AAGGCGCCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCCGTGTTGTTGAACACG 5725 Query 81418 CGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTG 81477 |||| ||| || | | || | ||| |||||||| || |||| || | Sbjct 5724 CGCAGCATCGGCACCAGGCCGTTCGACGTGCCGTTCGTGCCAGCGATGTAGCTGCCGGCG 5665 Query 81478 GCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTT--TGAAATCTGAGCAC 81535 | ||| | ||| | || |||||||| || | | ||| ||| | | |||| Sbjct 5664 GAGCGGATGTTGTGCACGTGCAGGCCGATGCCGCCGGCCGCCTTGCTGATGACGGCGCAC 5605 Query 81536 ACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTT---CATGTCAAGCAAGA 81592 || |||| || || ||||| || || ||||| || | || | | | || ||| Sbjct 5604 TCC--TTCAGCGTGTCGTAAATCCCGTCAATGCTGTCGTCCTTCGACGCGACGAGGAAGC 5547 Query 81593 AACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAA 81652 | |||| |||||| || || || |||||| ||||| || || ||||| ||||| Sbjct 5546 ACGAGCT---CATCTGCGGCTTTGGTGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCG 5490 Query 81653 TGAAATAACGGTTTGACATCAGGTCATAGGTTTC 81686 ||||| | | || |||||||| || || || || Sbjct 5489 TGAAAAAGCCCTTCGACATCAGATCGTACGTCTC 5456 >SEQ14990 Length=15354 Score = 167 bits (184), Expect = 3e-36 Identities = 183/243 (75%), Gaps = 3/243 (1%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| || |||||||| ||||||||||| ||| | || ||||| ||| | Sbjct 8951 ATCATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATTGCGCTGGAGGTCGAGGCC 9010 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | || | || | || ||||||| || ||||||||||||||||| || || || ||| Sbjct 9011 AGCGACACGATCGAGAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCGGAC 9070 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| || || || ||||| ||||| || ||||| | || || || || ||||| Sbjct 9071 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTAC 9130 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTTAA 27642 || |||| ||||| || || || || || || |||| || |||||||| ||| ||| Sbjct 9131 AACATCCAGAAGGAGTCGACGCTGCACCTNGTGCTGCGCCTGCGCGGTGGCCAA---TAA 9187 Query 27643 AGT 27645 ||| Sbjct 9188 AGT 9190 >seq3668 Length=3103 Score = 149 bits (164), Expect = 7e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| || ||||| || ||||| ||||| || | || ||||| ||| | Sbjct 390 ATCATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACGATCGCCCTCGAGGTCGAGGCG 331 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | || | ||| | || ||||||| || ||||||||||||||||| || || || ||| Sbjct 330 AGCGACACCATCGAGAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCGGAC 271 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| || || || || || ||||| || ||||| | || || || || ||||| Sbjct 270 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTAC 211 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| || || || || || || |||| || |||||||| Sbjct 210 AACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTGCGCCTGCGCGGTGG 161 >seq6451 Length=1481 Score = 140 bits (154), Expect = 4e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || ||||| ||||| || | || ||||| ||| | | Sbjct 217 ATGCAGATCTTTGTGAAGACCCTGACCGGTAAGACGATCGCCCTCGAGGTCGAGGCGAGC 158 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || ||||||||||||||||| || || || |||||| Sbjct 157 GACACCATCGAGAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCAG 98 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || ||||| || || || | || || || || ||||| || Sbjct 97 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAAGAGGGCCGCACGCTCGCGGACTACAAC 38 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCG 27620 |||| ||||| || || || || || || |||| Sbjct 37 ATCCAGAAGGAGTCGACGCTGCACCTCGTGCTGCG 3 >seq5330 Length=12009 Score = 114 bits (126), Expect = 1e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 27482 TGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTG 27541 ||||||| || ||||||||||||||||| || || || ||||||||||| || || || | Sbjct 4 TGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCTGATCTTCG 63 Query 27542 CTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCA 27601 | || ||||| || ||||| | || || || || ||||| || |||| ||||| || | Sbjct 64 CCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAACATCCAGAAGGAGTCGA 123 Query 27602 CTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || || |||| || |||||||| Sbjct 124 CGCTGCACCTCGTGCTGCGCCTGCGCGGTGG 154 >seq8796 Length=7791 Score = 98.7 bits (108), Expect = 1e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 64738 GTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGC 64797 ||||| || || ||||| || ||||| ||||| | | |||||||| || ||||| || Sbjct 7339 GTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGG 7398 Query 64798 CTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCAC 64854 |||||||| || ||| |||| |||||||||||||| || ||||||||||| ||| Sbjct 7399 CTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGGCTGCAC 7455 >seq6209 Length=3470 Score = 98.7 bits (108), Expect = 1e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 64738 GTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGC 64797 ||||| || || ||||| || ||||| ||||| | | |||||||| || ||||| || Sbjct 237 GTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGG 296 Query 64798 CTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCAC 64854 |||||||| || ||| |||| |||||||||||||| || ||||||||||| ||| Sbjct 297 CTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGGCTGCAC 353 >SEQ11735 Length=18701 Score = 84.2 bits (92), Expect = 2e-11 Identities = 286/433 (66%), Gaps = 16/433 (4%) Strand=Plus/Minus Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCT-GTC 32042 |||||| |||||||| ||||||||| | | | ||||| ||||| ||||| ||| Sbjct 16211 GACGGCTTCAAGCCTGGGCAGCGCAAGATTCTCTTTTCCTGCTTCAAGCGCAACCTCGTC 16152 Query 32043 GAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCA 32102 | | || ||||||| |||||||| || ||||| | ||||| | ||||| ||||| Sbjct 16151 AAC-GCGATCAAGGTGGTCCAGCTGTCCGGTTACGTCTCGGAGCACTCCGCCTACCACCA 16093 Query 32103 CGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAA 32162 ||||||| |||||| | || ||||| | | || || |||||||||| || Sbjct 16092 CGGCGAGCAGTCGCTGGTGCAGACGATTGTGGGCATGGCACAAGACTTTGTCGGCAGCAA 16033 Query 32163 TAACCTGAACTTACTCGAGCCA-TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGG 32221 ||| | || | | || | || |||||||| || ||||| || || |||| Sbjct 16032 CAACAT-CCCTCTCCTGCGCAAGGACGGTCAGTTTGGTACGCGGCTGCAGGGCGGAAAGG 15974 Query 32222 ---ATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTC--GCACCTTCGACGCGCAAGAT 32276 | || ||| | |||||||||||||| || ||| ||| | ||| | || || Sbjct 15973 ACCACGCCGCGGG---TCGTTACATCTTCACGCGGCTCATGCAGC-TCG-CCCGTGCCAT 15919 Query 32277 TTTCGACCCGTCGGACGA-TGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCG 32335 ||| |||| | ||||| | | || | |||||| || || || | | ||| | Sbjct 15918 CTTCCACCCTGCCGACGACTTCATTG-TGGAGTACAGGGACGACGATGGGCTGTCGGTGG 15860 Query 32336 AGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCG 32395 ||||| | |||||| ||| | | || ||| | | |||||||| | ||||||| Sbjct 15859 AGCCGTTCTTCTACGTCCCGATCATCCCAATGGTGCTTGTGAACGGCACGTCGGGCATCG 15800 Query 32396 GAACGGGGTTCAG 32408 | || || ||||| Sbjct 15799 GCACCGGCTTCAG 15787 >SEQ11734 Length=18705 Score = 84.2 bits (92), Expect = 2e-11 Identities = 286/433 (66%), Gaps = 16/433 (4%) Strand=Plus/Minus Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCT-GTC 32042 |||||| |||||||| ||||||||| | | | ||||| ||||| ||||| ||| Sbjct 16211 GACGGCTTCAAGCCTGGGCAGCGCAAGATTCTCTTTTCCTGCTTCAAGCGCAACCTCGTC 16152 Query 32043 GAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCA 32102 | | || ||||||| |||||||| || ||||| | ||||| | ||||| ||||| Sbjct 16151 AAC-GCGATCAAGGTGGTCCAGCTGTCCGGTTACGTCTCGGAGCACTCCGCCTACCACCA 16093 Query 32103 CGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAA 32162 ||||||| |||||| | || ||||| | | || || |||||||||| || Sbjct 16092 CGGCGAGCAGTCGCTGGTGCAGACGATTGTGGGCATGGCACAAGACTTTGTCGGCAGCAA 16033 Query 32163 TAACCTGAACTTACTCGAGCCA-TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGG 32221 ||| | || | | || | || |||||||| || ||||| || || |||| Sbjct 16032 CAACAT-CCCTCTCCTGCGCAAGGACGGTCAGTTTGGTACGCGGCTGCAGGGCGGAAAGG 15974 Query 32222 ---ATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTC--GCACCTTCGACGCGCAAGAT 32276 | || ||| | |||||||||||||| || ||| ||| | ||| | || || Sbjct 15973 ACCACGCCGCGGG---TCGTTACATCTTCACGCGGCTCATGCAGC-TCG-CCCGTGCCAT 15919 Query 32277 TTTCGACCCGTCGGACGA-TGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCG 32335 ||| |||| | ||||| | | || | |||||| || || || | | ||| | Sbjct 15918 CTTCCACCCTGCCGACGACTTCATTG-TGGAGTACAGGGACGACGATGGGCTGTCGGTGG 15860 Query 32336 AGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCG 32395 ||||| | |||||| ||| | | || ||| | | |||||||| | ||||||| Sbjct 15859 AGCCGTTCTTCTACGTCCCGATCATCCCAATGGTGCTTGTGAACGGCACGTCGGGCATCG 15800 Query 32396 GAACGGGGTTCAG 32408 | || || ||||| Sbjct 15799 GCACCGGCTTCAG 15787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570203231546960