Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq6451 96.9 2e-15 seq3668 86.0 4e-12 >seq6451 Length=1481 Score = 96.9 bits (106), Expect = 2e-15 Identities = 157/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 34492 CGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCG 34551 |||| ||| | || || || |||||| || ||||| || || | || || || | Sbjct 3 CGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 62 Query 34552 TCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTG 34611 ||||| || || || |||||||| || | ||||| ||||||||||| | ||||||||| Sbjct 63 TCTTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 122 Query 34612 TCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGGTTA 34669 || ||| || | || ||| | || ||||| |||| ||| || || | || | Sbjct 123 TC-CTGAATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGC-CTCGACCTCGAGGGCGA 180 Query 34670 TCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 |||| |||||||| | || |||||||| ||||||||| || Sbjct 181 TCGTCTTACCGGTCAGGGTCTTCACAAAGATCTGCATGGTG 221 >seq3668 Length=3103 Score = 86.0 bits (94), Expect = 4e-12 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| ||| | || || || |||||| || ||||| || || | || || || Sbjct 170 AGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGG 229 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || | ||||| ||||||||||| | |||||| Sbjct 230 CCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 289 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 ||||| ||| || | || ||| | || ||||| |||| ||| || || | || Sbjct 290 TTGTC-CTGAATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGC-CTCGACCTCGAGGG 347 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATTGTATGA 34719 ||||| |||||||| | || ||||| || ||||||||| || ||| ||| Sbjct 348 CGATCGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCATGATGTCTGTGTGA 400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314671936914689