Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value SEQ14990 98.7 9e-16 seq3668 96.9 3e-15 seq6451 95.1 1e-14 >SEQ14990 Length=15354 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||||||| | ||| | || || || || | Sbjct 8953 CATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATTGCGCTGGAGGTCGAGGCCAG 9012 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| |||| |||| || || || ||||| ||||| || ||||| || || || || Sbjct 9013 CGACACGATCGAGAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCA 9072 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||| ||||| || |||| || | || | | || ||||| Sbjct 9073 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAA 9132 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| || ||||||||||| | || | || |||| |||| |||||| Sbjct 9133 CATCCAGAAGGAGTCGACGCTGCACCTNGTGCTGCGCCTGCGCGGTGGC 9181 >seq3668 Length=3103 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||| ||| | || | || || || || || Sbjct 388 CATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACGATCGCCCTCGAGGTCGAGGCGAG 329 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || |||| || || || ||||| ||||| || ||||| || || || || Sbjct 328 CGACACCATCGAGAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCA 269 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||||||||| || |||| || | || | | || ||||| Sbjct 268 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAA 209 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||||||||| | || | || |||| |||| |||||||| Sbjct 208 CATCCAGAAGGAGTCGACGCTGCACCTCGTGCTGCGCCTGCGCGGTGGCAT 158 >seq6451 Length=1481 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 26983 ACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAAC 27042 || |||||||||| ||||| || || |||||||| ||| | || | || || || || Sbjct 222 ACACCATGCAGATCTTTGTGAAGACCCTGACCGGTAAGACGATCGCCCTCGAGGTCGAGG 163 Query 27043 CGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCG 27102 || |||| | || |||| || || || ||||| ||||| || ||||| || || | Sbjct 162 CGAGCGACACCATCGAGAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCGG 103 Query 27103 ATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATT 27162 | || ||||| | || | |||||||| || ||||||| | || | | || | Sbjct 102 ACCAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAAGAGGGCCGCACGCTCGCGGACT 43 Query 27163 ACAACATTCAAAAGGAGTCGAC 27184 ||||||| || ||||||||||| Sbjct 42 ACAACATCCAGAAGGAGTCGAC 21 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434836673396160