Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value SEQ14990 111 4e-19 seq3668 105 2e-17 seq3582 105 2e-17 seq6451 102 2e-16 >SEQ14990 Length=15354 Score = 111 bits (122), Expect = 4e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||| || || || || || |||| ||||| || || | || Sbjct 9174 CGCAGGCGCAGCACNAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTG 9115 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| ||||||||||| || || || ||||| ||||| || || Sbjct 9114 CGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCC 9055 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| || ||||| |||||| ||||| ||||| || || || || | | Sbjct 9054 TCCTTGTCCTGAATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCGACCTCCAGC 8995 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | || |||||||| |||| || || | ||| | ||||| Sbjct 8994 GCAATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 8954 >seq3668 Length=3103 Score = 105 bits (116), Expect = 2e-17 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||| || || || || || |||| ||||| || || | || Sbjct 167 CGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTG 226 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || |||||||| || || || ||||| ||||| || || Sbjct 227 CGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCC 286 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| || ||||| |||||| ||||||||||| | || || || | Sbjct 287 TCCTTGTCCTGAATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGG 346 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | ||||||||| || |||| || || | ||| | ||||| Sbjct 347 GCGATCGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 387 >seq3582 Length=16873 Score = 105 bits (116), Expect = 2e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| |||||| | || || | |||| || || ||||| || |||| ||||| Sbjct 4967 CAATTTTATAACGTTTTAATAACCTCTCATGGATTAGTGATGATATTTGCTTTTATTATG 5026 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||||||| || || || | || | || || ||| | ||| |||| ||||||| Sbjct 5027 CCTGTTATGATGGGTGGGTTGGTTAACTATTTTGTACCTGTTATGGCTGGTTTTCCTGAT 5086 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGA 7707 |||| |||||| || ||||||||||| ||||||||| Sbjct 5087 ATGGTTTTTCCTAGACTTAACAATATGAGTTTTTGA 5122 >seq6451 Length=1481 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || || || || || |||| ||||| || || | || | || || Sbjct 5 CAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTC 64 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || || || ||||| ||||| || || |||||||| Sbjct 65 TTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTC 124 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || ||||| |||||| ||||||||||| | || || || | | |||||| Sbjct 125 CTGAATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCGT 184 Query 225681 CTTGCCCGTCA 225691 ||| || |||| Sbjct 185 CTTACCGGTCA 195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192301506192902